| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,438,661 – 25,438,764 |
| Length | 103 |
| Max. P | 0.954168 |
| Location | 25,438,661 – 25,438,764 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.69 |
| Shannon entropy | 0.40417 |
| G+C content | 0.50335 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -18.17 |
| Energy contribution | -17.99 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.954168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25438661 103 - 27905053 GAGGCGAAAAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGAGUCGUCAGUCCAUCUCGACUGGCCAGCACGAAAGUGAAU--CAGAGCCUCGUUC (((((.......((((((..............)))))).........((((...(((((((......)))))))...(((....)))..)--))).))))).... ( -30.14, z-score = -2.03, R) >droAna3.scaffold_12911 5133507 88 - 5364042 UAAGUACAGAAGUGAUGACACAACUUAAUCCAUCAU--------GCCUCAA---GGCCGCCCACCCAAGUGAUCCACAAAUGCAUCAAACCCCUGAAAC------ ......(((...(((((.((................--------(((....---)))....(((....))).........))))))).....)))....------ ( -12.70, z-score = -1.04, R) >droEre2.scaffold_4820 7907782 100 + 10470090 GAGGCGAAAAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGA---GUCAGUCCAUCUCGACUGGCCAACACGAAAGCGAAU--CAGAGCCUCGUCC (((((.......((((((..............)))))).....((..(((.---(((((((......))))))))))(.(....).)..)--)...))))).... ( -26.64, z-score = -1.88, R) >droYak2.chr3R 7795384 100 + 28832112 AAGGCGAAGAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGA---GUCAGUCCAUCUCGACUGGCCAACACCAAAGUGAAU--CAGAGUCUCGUCC ..(((((.....((((((..............)))))).....(((.((((---(((((((......)))))))...(((....)))..)--))).)))))))). ( -26.14, z-score = -1.74, R) >droSec1.super_4 4295138 102 - 6179234 GAGGCGAAAAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGA---GUCAGUCCAUCUCGACUGGCCAGCUCGAAAGUGAAUCACAGAGCCUCGUUC (((((......(((((..(((..(((.............)))(((.((.(.---(((((((......)))))))))).)))...))).)))))...))))).... ( -30.32, z-score = -2.23, R) >droSim1.chr3R 25111433 102 - 27517382 GAGGCGAAAAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGA---GUCAGUCCAUCUCGACUGGCCAGCUCGAAAGUGAAUCACAGAGCCUCGUUC (((((......(((((..(((..(((.............)))(((.((.(.---(((((((......)))))))))).)))...))).)))))...))))).... ( -30.32, z-score = -2.23, R) >consensus GAGGCGAAAAAGUGAUGACACCAGCUAAUCCAUCAUCAAAGCCGACCUUGA___GUCAGUCCAUCUCGACUGGCCAGCACGAAAGUGAAU__CAGAGCCUCGUUC (((((......((((((.............))))))..................(((((((......)))))))......................))))).... (-18.17 = -17.99 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:11 2011