| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,398,596 – 25,398,695 |
| Length | 99 |
| Max. P | 0.807527 |
| Location | 25,398,596 – 25,398,695 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 88.80 |
| Shannon entropy | 0.21353 |
| G+C content | 0.34038 |
| Mean single sequence MFE | -14.90 |
| Consensus MFE | -12.68 |
| Energy contribution | -12.52 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25398596 99 - 27905053 -----------------UGGAUUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCCCUAAUUGCUGUAUUUCCUACGUCCAC-- -----------------(((((..............................((((((((........)))))))).((..((((((((.......)))))))).))...))))).-- ( -14.10, z-score = -1.10, R) >droSim1.chr3R 25070889 99 - 27517382 -----------------UGGCUUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGUCCAC-- -----------------((((...............................((((((((........)))))))).((..((((((((.......)))))))).))...).))).-- ( -12.70, z-score = -0.98, R) >droSec1.super_4 4256367 99 - 6179234 -----------------UGGCUUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGUCCAC-- -----------------((((...............................((((((((........)))))))).((..((((((((.......)))))))).))...).))).-- ( -12.70, z-score = -0.98, R) >droYak2.chr3R 7753260 99 + 28832112 -----------------UGGAUUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGUCCAC-- -----------------(((((..............................((((((((........)))))))).((..((((((((.......)))))))).))...))))).-- ( -15.30, z-score = -1.93, R) >droEre2.scaffold_4820 7866331 99 + 10470090 -----------------UGGAUUCACAAAAUGUGUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGUCCAC-- -----------------.(((..(((.....))).))).........(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))....-- ( -17.30, z-score = -2.06, R) >droAna3.scaffold_12911 5093741 101 - 5364042 ---------------UGGAAUAUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUCCGUCCGC-- ---------------.((((...((.....))..)))).........(((..((((((((........))))))))(((..((((((((.......))))))))....)))..)))-- ( -16.80, z-score = -2.10, R) >dp4.chr2 2268661 116 - 30794189 UGGGUCUGGCCAUUGCACAAAAUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCUCGC-- ((((...((.((((..............)))).))..))))......(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))....-- ( -18.14, z-score = -0.50, R) >droPer1.super_7 2433539 116 - 4445127 UGGGUCUGGCCAUUGCACAAAAUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCUCGC-- ((((...((.((((..............)))).))..))))......(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))....-- ( -18.14, z-score = -0.50, R) >droWil1.scaffold_181089 5661530 101 - 12369635 -----------------CAAAAUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCCAUCAG -----------------..............................(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))...... ( -14.00, z-score = -2.28, R) >droVir3.scaffold_12855 736442 99 - 10161210 -----------------CAAAAUCACAAAAUGCCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCUCUC-- -----------------..............................(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))....-- ( -14.40, z-score = -2.71, R) >droMoj3.scaffold_6540 21915552 98 + 34148556 -----------------CAAAAUCACAAAAUGCCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCUCU--- -----------------..............................(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))...--- ( -14.40, z-score = -2.49, R) >droGri2.scaffold_14906 1842476 99 - 14172833 -----------------CAAAAUCACAAAAUGCUUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACUCUCUC-- -----------------...................................((((((((........)))))))).((..((((((((.......)))))))).)).........-- ( -10.80, z-score = -1.89, R) >consensus _________________CAAAAUCACAAAAUGUCUUCCUCACUUUUCGCGCUUAAUUAAACAAUUAAAUUUAAUUACGGUUAAUAUGGCUCUAAUUGCUGUAUUUCCUACGCCCAC__ ...............................................(((..((((((((........)))))))).((..((((((((.......)))))))).))..)))...... (-12.68 = -12.52 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:01 2011