| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,396,614 – 25,396,687 |
| Length | 73 |
| Max. P | 0.521311 |
| Location | 25,396,614 – 25,396,687 |
|---|---|
| Length | 73 |
| Sequences | 10 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 66.51 |
| Shannon entropy | 0.68632 |
| G+C content | 0.53447 |
| Mean single sequence MFE | -14.98 |
| Consensus MFE | -5.82 |
| Energy contribution | -6.16 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521311 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25396614 73 - 27905053 AGCCAACAAUCAACGUCAUUCAGCGGUU-------CCCUUGGGCGCCUAAUGGCACCACCAGAAUCG-CCAGCUCCACCAA ......................((((((-------(...(((..(((....))).)))...))))))-)............ ( -18.20, z-score = -1.32, R) >droSim1.chr3R 25068918 73 - 27517382 AGCCAACAAUCAACGUCAUUCAGCGUUU-------CCCUUGGGCGCCUAAUGGCACCAACAGAAUCG-CCAGCUCCACCAA ......................(((.((-------(..((((..(((....))).))))..))).))-)............ ( -16.30, z-score = -1.34, R) >droSec1.super_4 4254394 73 - 6179234 AGCCAACAAUCAACGUCAUUCAGCGUUU-------CCCUUGGGCGCCUAAUGGCACCACCAGAAUCG-CCAGCUCCACCAA ......................(((.((-------(...(((..(((....))).)))...))).))-)............ ( -14.30, z-score = -0.46, R) >droYak2.chr3R 7751234 71 + 28832112 AACCAACAAUCAACGUCAUUCAGCGUUU-------UCCUUGGGCGCCUAAUGGCCCCACUACAAUCGACCAGCUCCAC--- .........(((((((......))))).-------....((((.(((....)))))))........))..........--- ( -14.30, z-score = -1.78, R) >droEre2.scaffold_4820 7864318 72 + 10470090 AGGCAACAAUCAACGUCAUUCAGCGGUU-------CCCUUGGGCGCCUAAUGGCCCCACCAGAAACG-GCAGCUCCACAA- .(....)...............((.(((-------(...((((.(((....)))))))...).))).-))..........- ( -18.20, z-score = 0.03, R) >droAna3.scaffold_13340 17672750 72 - 23697760 AGAAAACAAUUUGCCGCACGCAAGCAC--------CCCCUUAACGCAUCAAUGCCCCACCA-AAUUAGUCAGUUCCACCAA .(((.((((((((..((......))..--------.........(((....))).....))-)))).))...)))...... ( -6.60, z-score = -0.83, R) >dp4.chr2 2266469 69 - 30794189 ACACAACAAUCAACGUCAUUCAGUGGCC--------CCCAGGGCGCCUAAUGGCACCACCAUCGCCAUCACCACACA---- ..............((......(((((.--------.....((.(((....))).))......)))))......)).---- ( -15.50, z-score = -1.66, R) >droPer1.super_7 2431332 69 - 4445127 ACACAACAAUCAACGUCAUUCAGUGGCC--------CCCAGGGCGCCUAAUGGCACCACCAUCGCCAUCACCACACA---- ..............((......(((((.--------.....((.(((....))).))......)))))......)).---- ( -15.50, z-score = -1.66, R) >droWil1.scaffold_181089 5656051 81 - 12369635 UUACAACAAUCAACGUCAUUCACUGACUUGGACCCCUCGGGGUCGCCUAAUGGCUAGAGCAGCAAUCAAAGGAUAGAAAAG ..................(((.(((.(((.(((((....)))))(((....)))..))))))..(((....))).)))... ( -19.80, z-score = -1.57, R) >droVir3.scaffold_12855 734230 61 - 10161210 AUAGAACAAUCAACGUCAUUCAGUGGCC-----------AGGGCGCCUAAUGGCAAGAGCAGCAGCAACAGC--------- ..............((((((.((..((.-----------...))..))))))))....((....))......--------- ( -11.10, z-score = 0.56, R) >consensus AGACAACAAUCAACGUCAUUCAGCGGCU_______CCCUUGGGCGCCUAAUGGCACCACCAGAAUCG_CCAGCUCCAC_A_ ..............((((((..(((.((............)).)))..))))))........................... ( -5.82 = -6.16 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:00 2011