| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,393,455 – 25,393,524 |
| Length | 69 |
| Max. P | 0.900220 |
| Location | 25,393,455 – 25,393,524 |
|---|---|
| Length | 69 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 73.51 |
| Shannon entropy | 0.49694 |
| G+C content | 0.44655 |
| Mean single sequence MFE | -13.73 |
| Consensus MFE | -5.87 |
| Energy contribution | -6.11 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.900220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25393455 69 - 27905053 ACAACUGAAAUCAAGUUGUAAGCAGAUCUUAACUGCUUUGCCUCAAUUGGGUCUUUCCCCUUCCCACUC ((((((.......))))))((((((.......)))))).........((((...........))))... ( -14.60, z-score = -2.11, R) >droPer1.super_7 2427949 55 - 4445127 ACAACUGAAAUCAGCUUGUAGGAGCAUCAUAACUGCUC--------UCGACUCUUCUCCGAUU------ (((((((....))).)))).((((((.......)))))--------)................------ ( -10.90, z-score = -1.26, R) >dp4.chr2 2263043 55 - 30794189 ACAACUGAAAUCAGCUUGUAGGAGCAUCAUAACUGCUC--------UCGACUCUUCCCCGAUU------ (((((((....))).)))).((((((.......)))))--------)................------ ( -10.90, z-score = -1.45, R) >droEre2.scaffold_4820 7861074 64 + 10470090 ACAACUGAAAUCAAGUUGUAAGCAGAUCUCAACUGCUCCGCC-CAAUUGGAUCU--ACCGACCCCAA-- ((((((.......)))))).(((((.......))))).....-...((((....--.))))......-- ( -11.80, z-score = -1.84, R) >droYak2.chr3R 7747833 67 + 28832112 ACAACUGAAAUCAAGUUGUAAGCAGAUCUUAACUGCUCCGCCUCAAUUGGGUAU--CCCAUCCCCAAAA ((((((.......)))))).(((((.......))))).........(((((...--......))))).. ( -14.80, z-score = -2.82, R) >droSec1.super_4 4251220 69 - 6179234 ACAACUGAAAUCAAGUUGUAAGCAGAUCUUAACUGCUCUGCCUCAAUUGGGUCUUCCACAUCCCCAAUC ((((((.......))))))..(((((.(......).)))))....((((((...........)))))). ( -16.70, z-score = -3.05, R) >droSim1.chr3R 25065721 69 - 27517382 ACAACUGAAAUCAAGUUGUAAGCAGAUCUUAACUGCUCUGCCUCAAUUGGGUCUUCCCCAUCCCCGAUC ((((((.......))))))..(((((.(......).)))))....((((((...........)))))). ( -16.40, z-score = -2.66, R) >consensus ACAACUGAAAUCAAGUUGUAAGCAGAUCUUAACUGCUCUGCCUCAAUUGGGUCUUCCCCAUCCCCAA__ ((((((.......)))))).(((((.......)))))................................ ( -5.87 = -6.11 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:55:00 2011