| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,369,345 – 25,369,442 |
| Length | 97 |
| Max. P | 0.845086 |
| Location | 25,369,345 – 25,369,442 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Shannon entropy | 0.32258 |
| G+C content | 0.43547 |
| Mean single sequence MFE | -17.50 |
| Consensus MFE | -12.56 |
| Energy contribution | -14.00 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.845086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25369345 97 + 27905053 UUGCCAUUCCCCCCCCC----CCUUAAAACCUAUCAAAAUUUACUAUACUAUAUGUAUUUGUAUAUGCAUAUAGCACUCCC-UUCGAGGGCGAAACAAUCAC- (((((............----...........................((((((((((......))))))))))..(((..-...)))))))).........- ( -18.30, z-score = -3.64, R) >droSim1.chr3R 25042190 101 + 27517382 UUGCCAUUCCCCCACCCCUACCCCUAAUAACUACCAAAAUAUACUAUACUAUAUGUAGUUGUGUAUGCAUAUGGCACUCCC-UUCGAGGGCGAAACAAUCAC- .((((((...................((((((((....(((((......)))))))))))))(....)..))))))(.(((-.....))).)..........- ( -17.10, z-score = -1.06, R) >droSec1.super_4 4227632 96 + 6179234 UUGCCAUUCCCCCACCCAUCCCCCUAAUAACUACCAAAAUAUACU-----AUAUGUAGUUGUAUAUGCAUAUGGCACUCCC-UUCGAGGGCGAAACAAUCAC- (((((......................................((-----(((((((........)))))))))..(((..-...)))))))).........- ( -17.00, z-score = -1.53, R) >droEre2.scaffold_4820 7837336 90 - 10470090 UUGCCAUUCCCCCUGCU----CCUCCCAAACUAUUA---UGUACC-----UCAUGUAUUUGUAUAUGCAUA-GGCACUCCCCUUUGAGGGCGAGACAAUCACA .((((............----........((.....---.))...-----..((((((......)))))).-))))((((((.....))).)))......... ( -17.60, z-score = -0.90, R) >consensus UUGCCAUUCCCCCACCC____CCCUAAAAACUACCAAAAUAUACU_____AUAUGUAGUUGUAUAUGCAUAUGGCACUCCC_UUCGAGGGCGAAACAAUCAC_ (((((...........................................(((((((((........)))))))))..(((......)))))))).......... (-12.56 = -14.00 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:57 2011