| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,350,626 – 25,350,746 |
| Length | 120 |
| Max. P | 0.857281 |
| Location | 25,350,626 – 25,350,746 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 94.19 |
| Shannon entropy | 0.12599 |
| G+C content | 0.27399 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -24.16 |
| Energy contribution | -24.25 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857281 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 25350626 120 - 27905053 AAUACAACGCGACGCGUGCAAAUUGAUUUUCGCGUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((..(((((....((((.(((((............))))).)))))))))))))...)).))))))))))))))))....... ( -25.30, z-score = -0.52, R) >droPer1.super_7 2381553 118 - 4445127 AAUACAAC--GACGCGUGCAAAUUGAUUUUCGCUUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ........--....((((((((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).)))).))))))))))))))))....... ( -26.70, z-score = -2.09, R) >dp4.chr2 2214357 118 - 30794189 AAUACAAC--GACGCGUGCAAAUUGAUUUUCGCUUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ........--....((((((((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).)))).))))))))))))))))....... ( -26.70, z-score = -2.09, R) >droAna3.scaffold_12911 5044968 120 - 5364042 AAUACAAAGCGACGCGUGCAAAUUGAUUUUCGCAUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((....))))...................(((((((.......))))).))......)).))))))))))))))))....... ( -25.20, z-score = -0.84, R) >droEre2.scaffold_4820 7815809 120 + 10470090 AAUACAACGCGACGCGUGCAAAUUGAUUUUCGCGUUUCGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.(((...))).(((.(((((......))))).....(((((((.......))))).))......)))))))))))))))))))....... ( -24.50, z-score = -0.30, R) >droYak2.chr3R 7702262 120 + 28832112 AAUACUACGCGACGCGUGCAAAUUGAUUUUCGCGUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((..(((((....((((.(((((............))))).)))))))))))))...)).))))))))))))))))....... ( -25.30, z-score = -0.67, R) >droSec1.super_4 4209156 120 - 6179234 AAUACAACGCGACGCGUGCAAAUUGAUUUUCGCGUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((..(((((....((((.(((((............))))).)))))))))))))...)).))))))))))))))))....... ( -25.30, z-score = -0.52, R) >droSim1.chr3R 25023830 120 - 27517382 AAUACAACGCGACGCGUGCAAAUUGAUUUUCGCGUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((..(((((....((((.(((((............))))).)))))))))))))...)).))))))))))))))))....... ( -25.30, z-score = -0.52, R) >droWil1.scaffold_181089 5594309 119 - 12369635 AAGUUAUCGAAGCUCGUGCAAAUUGAUUUUCGCUUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGC-AAAAUUAAUUUCCAUGACUAUUA ..........((.(((((.(((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).))))-))))))))))).))))))).... ( -21.60, z-score = -1.03, R) >droVir3.scaffold_12855 678099 116 - 10161210 ---ACAGAACAACGCGUGCAAAUUGAUUUUCGCUCUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGC-AAAAUUAAUUUGCAUGACUAUUA ---...........((((((((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).))))-))))))))))))))))....... ( -28.70, z-score = -2.92, R) >droMoj3.scaffold_6540 21855030 116 + 34148556 ---ACAGAACAACGCGUGCAAAUUGAUUUUCGCUCUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGC-AAAAUUAAUUUGCAUGACUAUUA ---...........((((((((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).))))-))))))))))))))))....... ( -28.70, z-score = -2.92, R) >droGri2.scaffold_14906 1783642 116 - 14172833 ---ACUAAACAACCCAUGCAAAUUGAUUUUCGCUCUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGC-AAAAUUAAUUUGCAUGACUAUUA ---...........((((((((((((((((.((((((((..(((((....((((.(((((............))))).))))))))))))).))))-))))))))))))))))....... ( -29.20, z-score = -4.60, R) >consensus AAUACAACGCGACGCGUGCAAAUUGAUUUUCGCUUUUUGCAUGCAAAUUUCAAUCAAAAUUAAUUAGUUAACAUUUUUAUUGUUGUACAAAUGAGCAAAAAUUAAUUUGCAUGACUAUUA ..............((((((((((((((((.((..((((....))))...................(((((((.......))))).))......)).))))))))))))))))....... (-24.16 = -24.25 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:52 2011