| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,339,325 – 25,339,432 |
| Length | 107 |
| Max. P | 0.704821 |
| Location | 25,339,325 – 25,339,432 |
|---|---|
| Length | 107 |
| Sequences | 11 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 79.57 |
| Shannon entropy | 0.42587 |
| G+C content | 0.46901 |
| Mean single sequence MFE | -25.54 |
| Consensus MFE | -16.90 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.704821 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25339325 107 - 27905053 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGGCUGGCUGG----CUGGCUUACUAGCUCGAACUG ..(((((....(((((((.........(((.((....(..(((((.........)))))..)...)).))).)))))))...))))----).((((....))))....... ( -31.30, z-score = -1.67, R) >droPer1.super_7 2369656 99 - 4445127 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGG------------CUCGCUCACUAACCAAAGUUG .....((.((.((.(((((.((.....(((.((....(..(((((.........)))))..)...)).))).....))------------.))))).)).))))....... ( -23.30, z-score = -1.13, R) >dp4.chr2 2202546 99 - 30794189 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGG------------CUCGCUCACUAACCAAAGUUG .....((.((.((.(((((.((.....(((.((....(..(((((.........)))))..)...)).))).....))------------.))))).)).))))....... ( -23.30, z-score = -1.13, R) >droAna3.scaffold_12911 5033452 110 - 5364042 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGACUGGCUAGC-UGCUGGCUUGUUGACUUGGCUUA ..(((((....((((((((.((.....(((.((....(..(((((.........)))))..)...)).)))((((((......))))-.)).)).)))))))))))))... ( -31.50, z-score = -1.55, R) >droEre2.scaffold_4820 7804134 99 + 10470090 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGA------------CUGGCUUGCUAGCCCCAACUG .....((....(((((((.........(((.((....(..(((((.........)))))..)...)).))).))))))------------).((((....))))))..... ( -26.90, z-score = -2.26, R) >droYak2.chr3R 7689699 88 + 28832112 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGG--------------AGCCCAUCCA--------- .....((((...((((((.........(((.((....(..(((((.........)))))..)...)).))).))))))--------------.....)))).--------- ( -20.90, z-score = -1.00, R) >droSec1.super_4 4197952 111 - 6179234 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGGCUAGCUGGCUUACUGGCUUACUAGCUCGAACUG ..(((((....(((((((.........(((.((....(..(((((.........)))))..)...)).))).)))))))...)))))...(.((((....)))).)..... ( -32.00, z-score = -1.98, R) >droSim1.chr3R 25012629 111 - 27517382 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGGCUGGCUGGCUUACUGGCUUACUAGCUCGAACUG ..(((((....(((((((.........(((.((....(..(((((.........)))))..)...)).))).)))))))...)))))...(.((((....)))).)..... ( -32.00, z-score = -1.83, R) >droVir3.scaffold_12855 665061 87 - 10161210 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUCAGCACCGCUC------------------------ .(((.(((((((..((((((..((.....)).....))))))..))))))).....((((((........).))))).)))......------------------------ ( -20.10, z-score = -0.93, R) >droMoj3.scaffold_6540 21841803 87 + 34148556 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGAGCACCGCUC------------------------ ..((.((...((((((((.........(((.((....(..(((((.........)))))..)...)).))).)))))).))))))..------------------------ ( -19.90, z-score = -0.67, R) >droWil1.scaffold_181089 6785788 87 + 12369635 UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAGCUAACACGCGCUUGCAGCAGCUC------------------------ ((((.(((((((..((((((..((.....)).....))))))..)))))))....(((((((........).))))))..))))...------------------------ ( -19.70, z-score = 0.26, R) >consensus UUGCCGGAUUUGUCAGCGAUCCUCAAAGUGAUAAAAAUUGCUCGUAAAUCCUUAACGAGUGGAACUAACACGCGCUGGC___C___C___CUGGCUUACUAAC___A__UG ..((.(((((((..((((((..((.....)).....))))))..))))))).......(((.......)))))...................................... (-16.90 = -16.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:49 2011