| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,338,097 – 25,338,176 |
| Length | 79 |
| Max. P | 0.880772 |
| Location | 25,338,097 – 25,338,176 |
|---|---|
| Length | 79 |
| Sequences | 4 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 74.31 |
| Shannon entropy | 0.42102 |
| G+C content | 0.45629 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -13.93 |
| Energy contribution | -13.43 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.880772 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25338097 79 + 27905053 GCUCCAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGUUGCUUUCUAGCUAAAUGGCAUAAUAACCACAAAACCCAUUU-- .................(((((((((.((((.......)))).))..))....))))).....................-- ( -11.20, z-score = 0.03, R) >droSim1.chr3R 25011443 70 + 27517382 GCUCCAAUCUCCUUUCUUGCCAACGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUAACUACUU----------- ((..(............(((((....)))))..(((((((.....))))))))..)).............----------- ( -18.10, z-score = -2.45, R) >droSec1.super_4 4196772 67 + 6179234 GCUCCAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUACCCA-------------- ((..(............(((((....)))))..(((((((.....))))))))..))..........-------------- ( -18.90, z-score = -1.76, R) >droEre2.scaffold_4820 7802880 81 - 10470090 GCUCCAAGCUCCUUCCUUGCUGGUGGUGGCACUUCAGCUGCUUUGUAGCUGAAAGAUGUAAUAUCCAUGAGAUAUAUGAUA ((.....))..........((.((((..(((((((((((((...))))))).))).))).....)))).)).......... ( -20.80, z-score = -0.49, R) >consensus GCUCCAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAAUGGCAUAAUAACCAC_A___________ (((..............(((((....))))).((((((((.....)))))))).)))........................ (-13.93 = -13.43 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:49 2011