| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,336,423 – 25,336,513 |
| Length | 90 |
| Max. P | 0.743676 |
| Location | 25,336,423 – 25,336,513 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 89.70 |
| Shannon entropy | 0.18116 |
| G+C content | 0.43800 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -20.24 |
| Energy contribution | -21.74 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.743676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25336423 90 - 27905053 --GAAUUUAUGGGAUGCGGCAUAAUGGCAUAAUGGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU --...((((((((.((((((((...(((.(((((((.....))))))))))..)))).)))).((((....))))))))))))......... ( -35.80, z-score = -4.13, R) >droSim1.chr3R 25009774 82 - 27517382 --GAAUUUAUGGGAUGC--------GGCAUAAUGGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU --...((((((((..((--------(((.(((((((.....)))))))))).(((((......))))).....))))))))))......... ( -26.40, z-score = -2.04, R) >droSec1.super_4 4195029 82 - 6179234 --GAAUUUAUGGGAUGC--------GGCAUAAUGGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU --...((((((((..((--------(((.(((((((.....)))))))))).(((((......))))).....))))))))))......... ( -26.40, z-score = -2.04, R) >droYak2.chr3R 7686567 82 + 28832112 --GAAUUUAUGGGAUGC--------GGCAUAAUGGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU --...((((((((..((--------(((.(((((((.....)))))))))).(((((......))))).....))))))))))......... ( -26.40, z-score = -2.04, R) >droEre2.scaffold_4820 7801388 92 + 10470090 CCGAAUUUAUGGGAUGCGGCAUAAUGGCAUAAUGGCAUGUUGCCAUUGGCCUGCUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU .....((((((((.(((((((....(((.(((((((.....))))))))))...))).)))).((((....))))))))))))......... ( -33.20, z-score = -2.64, R) >droAna3.scaffold_12911 5030905 76 - 5364042 UCGAAUUUAUGGGAUGC----------------GGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUACCUAAUAAAAGUUACACU ........(((.(.(((----------------(((((...(((...)))...)))).))))).)))......................... ( -15.40, z-score = 0.09, R) >consensus __GAAUUUAUGGGAUGC________GGCAUAAUGGCAUGUUGCCAUUGGCCUGAUGCUCGCACGCAUUUAAAUGCCUCAUAAAAGUUACACU .....((((((((.(((........(((.(((((((.....))))))))))........))).((((....))))))))))))......... (-20.24 = -21.74 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:48 2011