| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,324,623 – 25,324,727 |
| Length | 104 |
| Max. P | 0.739064 |
| Location | 25,324,623 – 25,324,727 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Shannon entropy | 0.15375 |
| G+C content | 0.26603 |
| Mean single sequence MFE | -18.15 |
| Consensus MFE | -16.65 |
| Energy contribution | -17.65 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739064 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25324623 104 - 27905053 UUUAAAAACGAGAGCAAGGCGAAAAGUUGCGUUGUAUAAUUUUGUAAUGUAAAAAUAACUUGUAUAAGCAAAUCCUUGUUUUGUUUUUAUUUAAAUUACCUAUG ..(((((((.(((((((((.......((((.((((((((((((........)))))....)))))))))))..))))))))))))))))............... ( -21.30, z-score = -2.18, R) >droSim1.chr3R 24997579 96 - 27517382 --------CGAGAGCAAGGCGAAAAGUUGCGUUGUAUAAUUUUGUAAUGUAAAAAUAACUUGUAUAAGCAAAUCCUUGUUUUGUUUUUAUUUUAAUUACCUAUA --------.(((((((((((((....((((.((((((((((((........)))))....)))))))))))....)))))))))))))................ ( -20.20, z-score = -2.17, R) >droSec1.super_4 4183348 96 - 6179234 --------CGAGAGCAAGGCGAAAAGUAGCGUUGUAUAAUUUUGUAAUGUAAAAAUAACUUGUAUAAGCAAAUCCUUGUUUUGUUUUUAUUUAAAUUACCUAUG --------.(((((((((((((......((.((((((((((((........)))))....)))))))))......)))))))))))))................ ( -16.40, z-score = -0.84, R) >droEre2.scaffold_4820 7789620 103 + 10470090 AUAAGAAACGAGAGCAAGUCGAAAAGUUGCGUUGUAUAAUUUUGUAAUGAAAAAAUAACUUGAAUAAGCAAAUUC-UGUUUUGUUUUUAUUUAAAUUACCUAUG .......((((..((((.(.....).)))).)))).((((((...((((((((...(((..((((......))))-.)))...)))))))).))))))...... ( -14.70, z-score = -0.14, R) >consensus ________CGAGAGCAAGGCGAAAAGUUGCGUUGUAUAAUUUUGUAAUGUAAAAAUAACUUGUAUAAGCAAAUCCUUGUUUUGUUUUUAUUUAAAUUACCUAUG .........(((((((((((((....((((.((((((((((((........)))))....)))))))))))....)))))))))))))................ (-16.65 = -17.65 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:45 2011