| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,321,900 – 25,322,070 |
| Length | 170 |
| Max. P | 0.890197 |
| Location | 25,321,900 – 25,322,070 |
|---|---|
| Length | 170 |
| Sequences | 3 |
| Columns | 177 |
| Reading direction | reverse |
| Mean pairwise identity | 83.02 |
| Shannon entropy | 0.23204 |
| G+C content | 0.41569 |
| Mean single sequence MFE | -40.14 |
| Consensus MFE | -29.60 |
| Energy contribution | -28.83 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.890197 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25321900 170 - 27905053 UUAAGAACAAAUAGAACCACUAGAACCACCAGCACCACUCACCCAGCGGUGCACGUGGAGAAACA-UGCUGAU------AAAAUCCCUGCCAAAUCUCUUCCUUUCCUCGUCAGAUUCAAAAUCAUUAGUAAGCUGUAUAAAAGUAUCUCGAGAUAUUUUACUAUAUUUUACUUAUA .((((.....((((....(((((..((((..(((((.((.....)).)))))..)))).(((...-..(((((------..............................))))).))).......)))))...))))...((((((((....))))))))...........)))).. ( -29.01, z-score = -1.08, R) >droSec1.super_4 4180612 170 - 6179234 CUAAGAAUCAGCAGCACCACUAGAACCACCAGCACCACCCACCCGGCGGUGCACGUGGAGAAACAUUGGUGAAGUGGUGAUAAUCGCUGCCAAACCUAUUACGCUUCUCUAGAGAUUCGAAAUCAUUAGUAAGCUGUCUAAAAGUAUCUCCAGAUAUUUUACUAAAAGUA------- ....(((((.(((((((((((.....((((((((((.((.....)).)))))..(((......)))))))).))))))(.....))))))...............((....))))))).......((((((((.(((((............))))).)))))))).....------- ( -46.90, z-score = -2.78, R) >droSim1.chr3R 24994861 170 - 27517382 CUAAAAAUCAGCAGCACCACUAGAACCGCCAGCACCACCCACCCGGCGGUGCACGUGGAGAAACAUUGCUGAUGUGGUGAUAAUCGCUGCCAAACCUAUUACGAUUCUCUAGAGAUUCAAAAUCAUUAGUAAGCUGUCUAAAAGUAUCUCCAGAUAUUUUACUAAAAGUA------- ..........(((((..........((((..(((((.((.....)).)))))..)))).......(((((((((..(((.....)))..)............((.(((....))).))......)))))))))))))...((((((((....))))))))..........------- ( -44.50, z-score = -2.80, R) >consensus CUAAGAAUCAGCAGCACCACUAGAACCACCAGCACCACCCACCCGGCGGUGCACGUGGAGAAACAUUGCUGAUGUGGUGAUAAUCGCUGCCAAACCUAUUACGAUUCUCUAGAGAUUCAAAAUCAUUAGUAAGCUGUCUAAAAGUAUCUCCAGAUAUUUUACUAAAAGUA_______ ..........(((((...(((((..((((..(((((.((.....)).)))))..)))).......................................................(((.....))).)))))..)))))...((((((((....))))))))................. (-29.60 = -28.83 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:45 2011