| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,319,161 – 25,319,279 |
| Length | 118 |
| Max. P | 0.919161 |
| Location | 25,319,161 – 25,319,279 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 136 |
| Reading direction | forward |
| Mean pairwise identity | 71.63 |
| Shannon entropy | 0.52658 |
| G+C content | 0.54109 |
| Mean single sequence MFE | -41.60 |
| Consensus MFE | -22.82 |
| Energy contribution | -26.10 |
| Covariance contribution | 3.28 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25319161 118 + 27905053 ACCUACGUUUAUCGAUAUCGAUAGGCGGGCGACCGAA----GAAGCGACCGAACGGUUGAGCGGCGAAGAAACGACUGAA---------CGACCGUCGUUUCGCCACUGCGUUCUGAUCAGAACGGGCCGC----- ......((((((((....))))))))((....))...----....(((((....))))).(((((...((((((((.(..---------...).)))))))).......((((((....)))))).)))))----- ( -46.10, z-score = -2.22, R) >droSim1.chr3R 24991972 132 + 27517382 ACCUACGUUUAUCGAUAUCGAUAGGCGGGCGACCGAA----GAAGCAACCGAACGGUUGAGCGGCGAAGAAACGACUGAAACGGUCGAACAACCGUUGUUUCGCCACUGCGUUCUGAUCAGAACGGGCCGAGGCGC .(((.(((((((((....)))))))))(((.......----....(((((....)))))((.(((((((...((((((...))))))(((....))).))))))).)).((((((....)))))).))).)))... ( -50.20, z-score = -2.32, R) >droSec1.super_4 4177709 132 + 6179234 ACCUACGUUUAUCGAUAUCGAUAGGCGGGCGCCCGAA----GAAGCAACCGAACGGUUGAGCGGCGAAGAAACGACUGAAACGGUCGAACAACCGUUGUUUCGCCACUGCGUUCUGAUCAGAACGUGUCGAGGAGC .....(((((((((....))))))))).((.(((((.----....(((((....)))))((.(((((((...((((((...))))))(((....))).))))))).))(((((((....))))))).))).)).)) ( -50.80, z-score = -2.66, R) >droYak2.chr3R 7668311 136 - 28832112 ACCUACGUUUAUCGAUAUCGAUUGGCGGGCAACAACAACGGGCAGCAACCGAACGAUUGAGCGGCGAAGAAACGACUGAAAUGUUUGAACAACCGUUGCUUCACCACUGCGUUCUGAUCAGAACGGGCAGAGGCGC .(((.(((..((((....))))..)))(....)......(((.((((((((((((.((.((((.........)).)).)).)))))).......)))))).).)).(((((((((....)))))..)))))))... ( -37.01, z-score = -0.03, R) >droEre2.scaffold_4820 7783937 124 - 10470090 ACCUACGUUUAUCGAUAUCGAUAGGCGCGCAGCAACAACGGGCAGCAACCGAACGGUUGAGCGGCAGAGAAACGACUGAAAUAGC----CAACCGUUG--------CUGCCUUCUGAUCAGAACGGGCGGAGGCGU .....(((((((((....))))))))).((((((((..(((.......)))...(((((.((..(((........))).....))----)))))))))--------))))((((((..(.....)..))))))... ( -46.80, z-score = -2.67, R) >droMoj3.scaffold_6540 21819742 105 - 34148556 ACCUACGUCGACAGACAC---UAUACGUUUACCGAAC-----AACCAACCGUCUGCGCGCGCAGCAAUAAAACAACUGAAU--------CUAGUCUUGU-------UUUGGCUCCGAUCAGAACGAGC-------- ......(((....)))((---((...((((...))))-----........(.((((....)))))................--------.))))(((((-------(((((......)))))))))).-------- ( -18.70, z-score = 0.59, R) >consensus ACCUACGUUUAUCGAUAUCGAUAGGCGGGCAACCAAA____GAAGCAACCGAACGGUUGAGCGGCGAAGAAACGACUGAAA_GGU____CAACCGUUGUUUCGCCACUGCGUUCUGAUCAGAACGGGCCGAGGCGC .....(((((((((....)))))))))(((...............(((((....))))).((((....((((((((..................))))))))....))))(((((....)))))..)))....... (-22.82 = -26.10 + 3.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:44 2011