| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,305,221 – 25,305,276 |
| Length | 55 |
| Max. P | 0.689180 |
| Location | 25,305,221 – 25,305,276 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 66.38 |
| Shannon entropy | 0.56461 |
| G+C content | 0.49008 |
| Mean single sequence MFE | -16.78 |
| Consensus MFE | -3.63 |
| Energy contribution | -3.67 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.22 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.689180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25305221 55 - 27905053 CCACGCCGUCACACGA-AUUUGCCUCAAUGAG-----GCUGCUCUUGUUGUGACGAAACGA ......((((((((((-....(((((...)))-----)).....))).)))))))...... ( -18.50, z-score = -2.97, R) >droSim1.chr3R 24979167 57 - 27517382 ---CACCGUCGCACGA-AUUUGCCUCAAUGAUGAGGUGCUGCUCUUGUUGUGACGAAACGA ---...((((((((((-....((((((....)))))).......))).)))))))...... ( -17.10, z-score = -1.93, R) >droSec1.super_4 4163824 52 - 6179234 ---CACCGUCGCGCGA-AUUUGCCUCAAUGAUGAG--GCUGCUC---UUGUGACGAAACGA ---...(((((((.((-....((((((....))))--))...))---.)))))))...... ( -20.30, z-score = -3.71, R) >droYak2.chr3R 7653141 52 + 28832112 -CACACACUCGCACAAUAUUUGUCUCAAUGAG-----GCAGUU---GUUGUGACGAAAUGA -.......((((((((((.(((((((...)))-----)))).)---)))))).)))..... ( -18.30, z-score = -3.22, R) >dp4.chr2 2165779 53 - 30794189 ---CAACACCACA-GACACCUCUCUGUCUAAUA----GGCGAUUUUGUUAUGACGCCACAA ---.........(-((((......)))))....----((((.((.......)))))).... ( -9.70, z-score = -1.76, R) >consensus ___CACCGUCGCACGA_AUUUGCCUCAAUGAU_____GCUGCUCUUGUUGUGACGAAACGA ......(((((((........((..............)).........)))))))...... ( -3.63 = -3.67 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:40 2011