| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,298,537 – 25,298,641 |
| Length | 104 |
| Max. P | 0.721813 |
| Location | 25,298,537 – 25,298,641 |
|---|---|
| Length | 104 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 71.16 |
| Shannon entropy | 0.47497 |
| G+C content | 0.53335 |
| Mean single sequence MFE | -24.06 |
| Consensus MFE | -13.88 |
| Energy contribution | -13.80 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.721813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25298537 104 + 27905053 ----AUUCCAUUCCAUUCCCUUCU----CCUGCAACCAGUGACAUGCGGCGACGCAUCUCAUAAUAAUGAGCAGCGAAAAGAUGCCCACCGCUCAAUUUAAGGCGGCUGGUG ----...............(((.(----(((((.....((((.(((((....))))).))))........)))).)).)))..(((..(((((........)))))..))). ( -29.52, z-score = -1.71, R) >droSim1.chr3R 24971848 96 + 27517382 -----CUCCUCUCCCUUCACUUCC----CCAGCAACCAGUGACAUGCGGCGACGCAUCUCAUAAUAAUGAGCAGCGAAAAGAUGCCCACCGCUCAAUUUAAGGUG------- -----...................----......(((.((((.(((((....))))).)))).....(((((.(((......))).....)))))......))).------- ( -21.10, z-score = -1.33, R) >droYak2.chr3R 7646227 95 - 28832112 ----CAGCCUUUCCCUUCCCCUUC---CCCCGCAUCCAGUGACAUGCGGCGACGCAUCUCAUAAU---GAGCAGCGAAAAGAUGGCCACCGCUCAAUUUAAGGUG------- ----..(((((.............---...........((((.(((((....))))).))))..(---((((.((.(.....).))....)))))....))))).------- ( -22.90, z-score = -0.86, R) >droEre2.scaffold_4820 7762363 102 - 10470090 CCGCCUUCCCCUCCCUUCCCCUCCUUACCCCGCAUCCAGUGACAUGCGGCGACGCAUCUCAUAAU---GAGCAGCAAAAAGAUGCCCGCCGCUCAAUUUAAGGUG------- .((((((...............................((((.(((((....))))).))))..(---((((.((............)).)))))....))))))------- ( -26.10, z-score = -2.95, R) >droAna3.scaffold_12911 4986512 92 + 5364042 -----GUUUUCUGCGUCCUGGUUU-----CUGGCUCCUGUCACAUGCGGUGACAUUGCUCAUAAU---GAACACCGAAAGCCCGGCCAGUGUUCAAUUUCGAAAG------- -----(....(((.(.((.(((((-----.((((....))))....(((((.(((((....))))---)..))))).))))).))))))....)...........------- ( -20.70, z-score = 0.31, R) >consensus _____UUCCUCUCCCUUCCCCUCC____CCCGCAUCCAGUGACAUGCGGCGACGCAUCUCAUAAU___GAGCAGCGAAAAGAUGCCCACCGCUCAAUUUAAGGUG_______ .......((.............................((((.(((((....))))).))))......((((.(((......))).....)))).......))......... (-13.88 = -13.80 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:36 2011