| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,292,749 – 25,292,839 |
| Length | 90 |
| Max. P | 0.947078 |
| Location | 25,292,749 – 25,292,839 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 88.16 |
| Shannon entropy | 0.19131 |
| G+C content | 0.55872 |
| Mean single sequence MFE | -29.17 |
| Consensus MFE | -20.83 |
| Energy contribution | -21.07 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.77 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25292749 90 + 27905053 UCGGCUUGCAUGUGUGCG--CUGGCAUUUUCCCCAUUUCCCC-AUCCCUUGCCAGCACUCCAAGUCACUUGUCAUGGAGGCCUUUUGUCUGCC ..(((..(((...(.(((--((((((................-......))))))).(((((.(.(....).).))))))))...)))..))) ( -29.05, z-score = -2.59, R) >droSim1.chr3R 24966133 91 + 27517382 UCGGCCUGCAUGUGUGUG--CUGGCAUUUUCCCCUUUCCCCCCAUCCCUUGCCAGCACUCCAAGUCACUUGUCAUGGAGGCCUUUUGUCUGCC ..(((((.((((...(((--((((((.......................)))))))))..((((...)))).)))).)))))........... ( -31.90, z-score = -3.88, R) >droSec1.super_4 4151615 90 + 6179234 UCGGCCUGCAUGUGUGUG--CUGGCAUUUUCCCCCUUCCCCC-AUCCCUUGCCAGCACUCCAAGUCACUUGUCAUGGAGGCCUUUUGUCUGCC ..(((((.((((...(((--((((((................-......)))))))))..((((...)))).)))).)))))........... ( -31.95, z-score = -3.81, R) >droYak2.chr3R 7640046 83 - 28832112 UCGACUUGCAUGUGUGUGUGCUGGCAUUUUCCCUGCUUUC----------GCCAGCACUCCAAGUCACUUGUCAUGGAGGCCUUUUGUCUGCC ..((((((.......(.((((((((...............----------)))))))).))))))).........((((((.....)))).)) ( -23.77, z-score = -0.79, R) >consensus UCGGCCUGCAUGUGUGUG__CUGGCAUUUUCCCCAUUCCCCC_AUCCCUUGCCAGCACUCCAAGUCACUUGUCAUGGAGGCCUUUUGUCUGCC ..(((((.((((.(((....((((((.......................)))))))))..((((...)))).)))).)))))........... (-20.83 = -21.07 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:35 2011