| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,288,132 – 25,288,234 |
| Length | 102 |
| Max. P | 0.902452 |
| Location | 25,288,132 – 25,288,234 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.08 |
| Shannon entropy | 0.55721 |
| G+C content | 0.64177 |
| Mean single sequence MFE | -48.22 |
| Consensus MFE | -19.07 |
| Energy contribution | -18.60 |
| Covariance contribution | -0.47 |
| Combinations/Pair | 1.58 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902452 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25288132 102 - 27905053 ------------CCAUUUCGCCGGCCACCGGAA------CCGGAAACGCAUUGGCGAAGGCCAACGUGGUGGCUGGCACAUCCGGCGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUACGG ------------(((((((((((((((((....------..(....)((.(((((....))))).)))))))))))).(((..((((((.......))))))..))))))))))...... ( -54.50, z-score = -4.27, R) >droSim1.chr3R 24961525 102 - 27517382 ------------CCAUUUCGCCGGCCACCGGAA------CCGGAAACGCAUUGGCGAAGGCCAAUGUGGUGGCGGGCACAUCCGGUGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUGCGG ------------((((((((((.((((((....------..(....)((((((((....)))))))))))))).))).(((..((..((.......))..))..))))))))))...... ( -54.20, z-score = -3.59, R) >droSec1.super_4 4146999 102 - 6179234 ------------CCAUUUCGCCGGCCACCGGAA------CCGGAAACGCAUUGGCGAAGGCCAACGUGGUGGCGGGCACAUCCGGUGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUGCGG ------------((((((((((.((((((....------..(....)((.(((((....))))).)))))))).))).(((..((..((.......))..))..))))))))))...... ( -49.90, z-score = -2.32, R) >droYak2.chr3R 7635327 114 + 28832112 CAUUUCCGUUGCCCAUUUCACCGGCCACCGGAA------CCGGAAACGCAUUUGCGAAGGCCAACGUGGUGGCGGGCACAUCCGGUGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUGCGG .....((((.(((........(((((((((((.------((.....(((....)))...((((......)))))).....)))))))))))..(((.(........).))).))).)))) ( -47.00, z-score = -0.85, R) >droEre2.scaffold_4820 7749853 102 + 10470090 ------------CCAUUUCGCCGGCCACCGGAA------CCGGAAACGCAUUUGCGAAGGCCAACGUGGUGGCGGGCACGUCCGGUGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUGCGG ------------.(((..((..((((.(((...------.)))...(((....)))..))))..))..)))((((.(((.(((((..((.......))..))....))).))).)))).. ( -45.00, z-score = -0.87, R) >droAna3.scaffold_12911 4976105 114 - 5364042 CGUUGCCAUUGCCCAUUUCCCCCGCCACCGGAA------CCGGAACUGCGUUGGCAAAGGCCAGUGUGGUGGCCGGCACAUCCGGUGGCUGAUCCUGCUGCUCGAUCGAGGUGGCUGAAG .((..((................(((((((((.------((((.((..(((((((....)))))))..))..))))....)))))))))(((((.........))))).))..))..... ( -50.30, z-score = -1.72, R) >dp4.chr2 2146051 108 - 30794189 ------------CCAUUUCCCCGGCCACGGGAACGGGCCCGGGCACGGCGUUGGCGAAGGACAGCGUGGUGGCCGGCACCUCUGGCGGCUGAUCCUGCUGCUCGAUGGAGGUGGGAGAUG ------------.((((((((.((((.((....))))))(((.(((.((((((.(....).)))))).))).)))..((((((((((((.......))))))....)))))))))))))) ( -60.90, z-score = -3.35, R) >droPer1.super_7 2314488 108 - 4445127 ------------CCAUUUCCCCGGCCACGGGAACGGGCCCGGGCACGGCGUUGGCGAAGGACAGAGUGGUGGCCGGCACCUCUGGCGGCUGAUCCUGCUGCUCGAUGGAGGUGGGAGAUG ------------.((((((((.((((.((....))))))(((.(((.((.(((.(....).))).)).))).)))..((((((((((((.......))))))....)))))))))))))) ( -54.90, z-score = -1.94, R) >droWil1.scaffold_181089 8066283 93 - 12369635 ---------------------------CAAGUGUAUCACCAGCAACGGCAUUGGCAAAGGCCAAUGUGGUGGCAGGCACAUUUGGUGGUUGAUCCUGUUGCUCAAUGGAAGUGGGUGCAG ---------------------------....((((((.(((((((((((((((((....))))))))((...(((.(((.....))).)))..))))))))....))).....)))))). ( -32.80, z-score = -1.00, R) >droVir3.scaffold_12822 2681424 95 - 4096053 --------------------GGUGUCCCCGGCC-----ACGGCAACGGCAUGGGCAAAGGCCAACGUGGUUGCCGGAAUCGCCGGCGGCUGAUCCUGCUGCUCAAUGGAUGUGGGCAUCG --------------------(((((((.((((.-----.(((((((.((...(((....)))...)).))))))).....))))(((((.......)))))...........))))))). ( -45.30, z-score = -1.38, R) >droMoj3.scaffold_6540 26751648 95 - 34148556 --------------------GGUAUCGCCCGCA-----ACGGCAACUGCAUUGGCAAAGGCCAGGGUGGUGGCAGGGAUCGCCGGCGGCUGGUCCUGCUGCUCAAUGGAAGUGGGUGCCG --------------------(((((((((((((-----..(....))))..((((....))))))))((..(((((.((((((...))).))))))))..))...........)))))). ( -42.30, z-score = -0.51, R) >droGri2.scaffold_14624 3566008 95 - 4233967 --------------------UGUAUCGCCGGCA-----ACGGCAACGGCAUUGGCAAAGGCCAAUGUUGUGGCGGGAAUUGCAGCUGGCUGAUCCUGUUGCUCGAUGGAUGUGGGUGGUG --------------------..(((((((.(((-----.((....))((((((((....)))))))).(..((((((....(((....))).))))))..)........))).))))))) ( -41.60, z-score = -2.75, R) >consensus ____________CCAUUUC_CCGGCCACCGGAA______CCGGAACCGCAUUGGCGAAGGCCAACGUGGUGGCGGGCACAUCCGGUGGCUGAUCCUGCUGCUCAAUGGAGGUGGCUGCGG ........................((((.(((..............(((.(((((....))))).)))(((.....))).)))((((((.......))))))........))))...... (-19.07 = -18.60 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:34 2011