| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,256,130 – 25,256,227 |
| Length | 97 |
| Max. P | 0.591786 |
| Location | 25,256,130 – 25,256,227 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 121 |
| Reading direction | forward |
| Mean pairwise identity | 68.35 |
| Shannon entropy | 0.46482 |
| G+C content | 0.35066 |
| Mean single sequence MFE | -21.41 |
| Consensus MFE | -12.80 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25256130 97 + 27905053 GGUAAUCAAGUCGAGGAGUGUCAUAAAUACUCAUUUGAUUUGAAUGCGUGUACUUCCUUUGAAUUUCUCAGUAAGAGACAAGUUAUUACACAAGCCU------------------------ .(((.((((((((((((((((.....)))))).)))))))))).)))(((((.(..(((.(....((((.....))))))))..).)))))......------------------------ ( -26.70, z-score = -3.00, R) >droSim1.chr3R 24931786 97 + 27517382 GGUAAUCAAGUCGCGGAGUGUCAUAAAUACUCAUUUGAUUUGAAUGGUGGUACUGCCUUUGAAUUUCCCAGUAGGAGACAAGUUAUUUAUCCAGCAU------------------------ .....((((((((..((((((.....))))))...))))))))(((.((((((((.............)))))(....)...........))).)))------------------------ ( -22.92, z-score = -1.01, R) >droSec1.super_4 4115188 97 + 6179234 GGUAAUCAAGUCGAGGAGUGUCAUAAAUACUCAUUUGAUUUGAAUGGUUGUACUUCCUUUGAAUUUCCCAGUAAAAGACAAGCUAUUUCUCCAGCAU------------------------ ((...((((((((((((((((.....)))))).))))))))))((((((((.(((...(((.......)))...))))).))))))....)).....------------------------ ( -21.70, z-score = -1.57, R) >droYak2.chr3R 7602257 121 - 28832112 GGUCAUCAAGUGCAGAAAUGUCAUAAAUAUUUAUUUGAUUUGAAUUGUUGUACUUCCUUUAAUCAUCAUGAAUCAAAAGAUAUCUGUGAAAAAGUUAAAAACGAAGUUCCUUCUCCUUUAC ((.(.((.....((....))(((((.((((((.(((((((((...(((((.........))).))...))))))))))))))).))))).............)).)..))........... ( -14.30, z-score = 1.03, R) >consensus GGUAAUCAAGUCGAGGAGUGUCAUAAAUACUCAUUUGAUUUGAAUGGUUGUACUUCCUUUGAAUUUCCCAGUAAAAGACAAGUUAUUUAACAAGCAU________________________ .....((((((((((((((((.....)))))).)))))))))).............................................................................. (-12.80 = -12.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:27 2011