| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,255,436 – 25,255,534 |
| Length | 98 |
| Max. P | 0.765557 |
| Location | 25,255,436 – 25,255,534 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 61.13 |
| Shannon entropy | 0.62817 |
| G+C content | 0.37148 |
| Mean single sequence MFE | -21.09 |
| Consensus MFE | -6.56 |
| Energy contribution | -6.48 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765557 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25255436 98 + 27905053 GUUCUUAGCACAGUGGCGGUUAAAGUUAUACUGCCAGUCG--GCAUAUAAACUAUU------------UCGGUAUUCUAAGAAGUAUCUUGAAGUAGAAGGUAAAAGAUACG .(((((((...((((.(((......(((((.((((....)--))))))))......------------))).)))))))))))(((((((..............))))))). ( -25.14, z-score = -2.35, R) >droEre2.scaffold_4820 7716831 112 - 10470090 GUUCUUAACACAGCGGCGGUCAAAGUAAUAGUGUCAUUCUCUGCAAACUAUUUGGUAAAAUCAAAGCCUUAGUGUUCUAGGAAGUAUCUAAAUGCAGGAGGUAAAAGAAAUA .(((((.((((....((.......))....)))).((..((((((.....((((((...))))))..(((((....)))))...........))))))..))..)))))... ( -19.90, z-score = -0.05, R) >droYak2.chr3R 7601538 94 - 28832112 GUUCUUAACACAGUGGCGGUUAAAGUAAUAGUGUCAUUCC--CUAUAGAA-CUAUU-------------UGGUAAU--GAAAUGCCGCCAAAAUGAAGAGUUUAAAGAAAUA .(((((.......(((((((.............(((((((--..(((...-.))).-------------.)).)))--))...))))))).....)))))............ ( -19.99, z-score = -1.96, R) >droSec1.super_4 4114484 75 + 6179234 GUUCUAAGCACAGUGGCGGUUAAAGUUAUACCGCCAGUCU--GCAUACAA-CUAUU------------U-GGUAUUCUAAGAAGUAAAAUG--------------------- .......(((.(.(((((((.........))))))).).)--)).....(-((.((------------(-((....))))).)))......--------------------- ( -20.80, z-score = -2.92, R) >droSim1.chr3R 24931080 75 + 27517382 GUUCUUAGCACAGUGGCGGUUAAAGUUAUACCGCCAGUCU--GCAUACAA-CUAUU------------U-GGUAUUCAAAGAAGUAAAAUG--------------------- .(((((.(((.(.(((((((.........))))))).).)--)).....(-((...------------.-))).....)))))........--------------------- ( -19.60, z-score = -2.61, R) >consensus GUUCUUAGCACAGUGGCGGUUAAAGUUAUACUGCCAGUCU__GCAUACAA_CUAUU____________U_GGUAUUCUAAGAAGUAACAUGA___A__AG_U_AAAGA_A__ ..............((((((.........))))))............................................................................. ( -6.56 = -6.48 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:26 2011