| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,252,036 – 25,252,145 |
| Length | 109 |
| Max. P | 0.927297 |
| Location | 25,252,036 – 25,252,145 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 74.95 |
| Shannon entropy | 0.48453 |
| G+C content | 0.44350 |
| Mean single sequence MFE | -27.00 |
| Consensus MFE | -16.59 |
| Energy contribution | -17.85 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.927297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25252036 109 + 27905053 -AAUUUCGCCCAUCUUUCGGUC-CUGGCAAAAUGCCAGCUAAUCCAAAGCCAGGCGCACCUGCUACACUCAGAAAAAGGCAGGGAAAUAAAUUAAAUACUUGAAACUACUU- -.((((((((...((((.((..-(((((.....))))).....))))))...)))...((((((.............))))))))))).......................- ( -27.72, z-score = -2.03, R) >droAna3.scaffold_12911 4940796 94 + 5364042 CAUUUUCACCCUCCUUCAGAUUGUUGGCAAAGUGCCAGAUCAUCCUUAGCCGGGCUUACCUGCUACACUUGGACAUUGUUCCUUUGUCAAAUUU------------------ .......................(((((((((.(...(((..(((.((((.((.....)).)))).....))).)))...))))))))))....------------------ ( -18.30, z-score = -0.15, R) >droSim1.chr3R 24927713 110 + 27517382 -AAUUUCGCCCAUCUUUCGGUC-CUGGCAAAAUGCCAGCUCAUCCUAAGCCGGGCGCACCUGCUACACUCAGAAAAAGGCAGGGAAAUAAAUUUAAUACUUGAAAUUACUUC -((((((((((..(((..(((.-(((((.....)))))...)))..)))..))))...((((((.............))))))..................))))))..... ( -30.72, z-score = -2.51, R) >droSec1.super_4 4111124 110 + 6179234 -AAUUUCGCCCAUCUUUCGGUC-CUGGCAAAAUGCCAGCUCAUCCUAAGCCGGGCGCACCUGCUACACUCAGAAAAAGGCAGGGAAAUAAAUUAAAUACUUGAAAUUACUUC -((((((((((..(((..(((.-(((((.....)))))...)))..)))..))))...((((((.............))))))..................))))))..... ( -30.72, z-score = -2.56, R) >droYak2.chr3R 7598132 105 - 28832112 -AAUUUCGCCCUCCUUUCUGGC-CUGGCAAAAUGCCAGUUCAUCCUAAGCCGGGCGCACCUGAUACACUUAAAAAAAGGCAAGCAAGGAA--GAAAUAAUUCAAAUGGU--- -.(((((((((..(((..((..-(((((.....)))))..))....)))..))))...(((......(((.....))).......)))..--)))))............--- ( -27.02, z-score = -0.78, R) >droEre2.scaffold_4820 7713443 108 - 10470090 -AAUUUCGCCCUCCUUUCGGUC-CUGGCAAAAUGCCAGUUCAUCCUAAGCCGGGCGCACCUGACACACUUAGAAAAAGGCAGGGAAAAAA--UAAACAUUUCCAAUAUUUGU -..(((..(((((((((..(..-(((((.....)))))..)...(((((.((((....)))).....)))))..))))).))))..))).--.................... ( -27.50, z-score = -1.45, R) >consensus _AAUUUCGCCCACCUUUCGGUC_CUGGCAAAAUGCCAGCUCAUCCUAAGCCGGGCGCACCUGCUACACUCAGAAAAAGGCAGGGAAAUAAAUUAAAUACUUGAAAUUACUU_ ......(((((..(((..(((..(((((.....)))))...)))..)))..)))))..((((.................))))............................. (-16.59 = -17.85 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:26 2011