| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,250,578 – 25,250,722 |
| Length | 144 |
| Max. P | 0.643307 |
| Location | 25,250,578 – 25,250,722 |
|---|---|
| Length | 144 |
| Sequences | 8 |
| Columns | 151 |
| Reading direction | reverse |
| Mean pairwise identity | 73.45 |
| Shannon entropy | 0.54355 |
| G+C content | 0.52520 |
| Mean single sequence MFE | -43.81 |
| Consensus MFE | -19.02 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643307 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25250578 144 - 27905053 -GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCUGGGUUUAUGAGGCAGUAAUUGCUGGCAGUUG---CGGGAAAAGCUGGGAAACUGCGAGGAGUGGUGGAUCGGCGGAAAAACGGGCCGAGCCU -..((((((.(((.((((...............((((.((.....---(((....)))...)).)))).(.((((....)))).).))))---))).....(((((...((..(.....)..))...)))))........))))))..... ( -46.70, z-score = -2.04, R) >droSim1.chr3R 24926251 135 - 27517382 -GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCUGGGUUUAUGAGGCAGUAAUUGCUGGCAGUUG---CGGGAAAAG--------CUG-GAAAAGUGGGGAGUCGGGAGAAAAACGGGCCGAGCCU -(((..(((((..(((((...............((((.((.....---(((....)))...)).)))).....(((((((....))))))---).......)--------)))-)....)))))..)))...........((((...)))) ( -36.50, z-score = -0.49, R) >droSec1.super_4 4109663 143 - 6179234 -GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCUGGGUUUAUGAGGCAGUAAUUGCUGGCAGUUG---CGGGAAAAGCUGGGAAACUG-GGAAAGUGGGGAAUGGGGGGAAAAACGGGCCGAGCCU -..((((((.(((.((((...............((((.((.....---(((....)))...)).)))).(.((((....)))).).))))---)))......(..(....)..-).........................))))))..... ( -39.90, z-score = -1.21, R) >droYak2.chr3R 7596715 128 + 28832112 -GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCCGGCUUUAUGAGGCAGUAAUUGCUGGCAGUUG---UGGG--AAAACUGGAAAGUGGGGGAG-------------GGAAAGGUGGG-CGCGCCU -....(((((((((((((((......................((.---(((....)))))((((....)))).....)))))))).....---....--...(((....))).......-------------.....))))))-)...... ( -38.60, z-score = -1.32, R) >droEre2.scaffold_4820 7711980 143 + 10470090 -GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCCGGGUUUAUGAGGCAGUAAUUGCUGGCAGUUG---CGGGAGAAAGUGGGGAAGUCGGGGAGUUGGGGGAUUGGUGGAAAUGCGGG-CGAGCCU -(((..(((.(((.((((...............((((.((..((.---(((....))))).)).)))).(.((((....)))).).))))---))).........)))..)))..........(((.(((.(.(.....).).-))).))) ( -36.10, z-score = 0.56, R) >droAna3.scaffold_12911 4939345 111 - 5364042 -CAGGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU---GAGGAGACUCCGGCUUUAUGAGGCCGUAAUUGCUGGCAGUUG---UGGAACGGAGCUGGGGAAACUGGGA--------------------------------- -..(..((.((.((((((((............((((.....))))---(((....)))((((((....))))))...)))))))).))..---.))..)....((.((....)).)).--------------------------------- ( -36.60, z-score = -2.10, R) >dp4.chr2 2105761 151 - 30794189 GUCUGGCCUACCGUCAGCGGGAAAAUAAUUAAACGUAUACAACGUGAGGAGGAGACUCUGGCUUUAUGAGGCCGUAAUUGCUGGCAGCUGGCUCACGGCGGAGAAGGAGACGGAGCCGGAGUCGGAGUCGGAGGAGUAGGCCGAAGAAACU ...(((((((((((((((((............((((.....))))..((((....))))(((((....)))))....))))))))..(((((((.((((......(....)...)))))))))))........).))))))))........ ( -60.20, z-score = -3.47, R) >droPer1.super_7 2273543 151 - 4445127 GUCUGGCCUACCGUCAGCGGGAAAAUAAUUAAACGUAUACAACGUGAGGAGGAGACUCUGGCUUUAUGAGGCCGUAAUUGCUGGCAGCUGGCUCACGCCGGAGAAGGAGACGGAGCCGGAGUCGGAUUCGGAGGAGUAGGCCGAAGAAACU ...(((((((((.((.................((((.....))))..(((...((((((((((((.....(((((....)).)))..(((((....)))))....(....)))))))))))))...))).)).).))))))))........ ( -55.90, z-score = -2.21, R) >consensus _GAUGGCCUACCGUCAGCGGAAAAAUAAUUAAACGUAUACAACGU___GAGGAGACUCUGGCUUUAUGAGGCAGUAAUUGCUGGCAGUUG___CGGGAAAAAGUGGGAAACUG_GGGAGGUGGGGAAUCGG_GGAAAAGCGGG_CGAGCCU ....((....))((((((((............((((.....))))...(((....)))...................)))))))).................................................................. (-19.02 = -19.02 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:23 2011