| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,057,335 – 9,057,386 |
| Length | 51 |
| Max. P | 0.538782 |
| Location | 9,057,335 – 9,057,386 |
|---|---|
| Length | 51 |
| Sequences | 7 |
| Columns | 59 |
| Reading direction | forward |
| Mean pairwise identity | 80.16 |
| Shannon entropy | 0.37331 |
| G+C content | 0.47174 |
| Mean single sequence MFE | -13.29 |
| Consensus MFE | -7.78 |
| Energy contribution | -8.19 |
| Covariance contribution | 0.41 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.538782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9057335 51 + 23011544 GUGGAAGGACAAACAUUUGUCCGGAAUAAC-----AGCUUCUUCCACUCCUUUCGA--- ((((((((((((....))))))(((.....-----...))))))))).........--- ( -14.60, z-score = -2.40, R) >droSim1.chr2L 8837770 51 + 22036055 GUGGAAGGACAAACAUUUGUCCGGGAUAAC-----AGCUUCUUCCACUCCUUUCGA--- (((((.((((((....)))))).(((....-----....)))))))).........--- ( -14.60, z-score = -1.88, R) >droSec1.super_3 4523527 51 + 7220098 GUGGAAGGACAAACAUUUGUCCGGGAUAAC-----AGCUUCUUCCACUCCUUUCGA--- (((((.((((((....)))))).(((....-----....)))))))).........--- ( -14.60, z-score = -1.88, R) >droYak2.chr2L 11717426 51 + 22324452 AUGGAAGGACAAACAUUUGUCCGGGAUAAC-----AGCUUCUUCCACUCCUUUCGA--- ..(((.((((((....)))))).(((....-----.......)))..)))......--- ( -12.10, z-score = -1.13, R) >droEre2.scaffold_4929 9658424 51 + 26641161 GUGGAAGGACAAACAUUUGUCCGGGAUAAC-----AGCUUCUUCCACUCCUUUCGA--- (((((.((((((....)))))).(((....-----....)))))))).........--- ( -14.60, z-score = -1.88, R) >droAna3.scaffold_12943 396413 50 + 5039921 CCGGCAGUACAAACAUUUGUCGGGUAUAAC-----AGCUUCUUCCACUCCUUUCG---- (((((((.........))))))).......-----....................---- ( -8.40, z-score = -1.47, R) >droWil1.scaffold_180703 86471 59 - 3946847 GCUGUCGGACAAACAUUUGUCCAAGGAAGUGAAGGAGCAAUGUCGUCUCCACCCACCUA ......((((((....))))))......(((..(((((......).))))...)))... ( -14.10, z-score = -0.51, R) >consensus GUGGAAGGACAAACAUUUGUCCGGGAUAAC_____AGCUUCUUCCACUCCUUUCGA___ ((((((((((((....))))))(......)...........))))))............ ( -7.78 = -8.19 + 0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:31 2011