| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,229,454 – 25,229,550 |
| Length | 96 |
| Max. P | 0.557423 |
| Location | 25,229,454 – 25,229,550 |
|---|---|
| Length | 96 |
| Sequences | 9 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.61349 |
| G+C content | 0.47139 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -8.45 |
| Energy contribution | -8.48 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557423 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25229454 96 - 27905053 GGGUGUGGUCGGCUGGAAGGCAGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCAAACACGAGC-----CGGUCGGCUAAUAA .....(((((((((((..........((((((......)))))).((((((((.(((.......))).))))..))))...)-----)))))))))).... ( -33.10, z-score = -2.47, R) >droSim1.chr3R 24904243 96 - 27517382 GGGUGUGGUUGGCUGGAAGGCAGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCAAACACGAGC-----CGGUCGGCUAAUAA .......(((((((((..(((.....((((((......)))))).((((((((.(((.......))).))))..))))..))-----)..))))))))).. ( -34.20, z-score = -2.99, R) >droSec1.super_4 4089685 96 - 6179234 GGGUGUGGUCGGCUGGAAGGCCGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCAAACACGAGC-----CGGUCGGCUAAUAA .....(((((((((((.....(((..((((((......)))))).((.(((((.(((.......))).))))).)))))..)-----)))))))))).... ( -33.10, z-score = -1.92, R) >droYak2.chr3R 7576234 96 + 28832112 GGGUGUGGUCGGGUGAAUGGCAGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGACGCAAACACGAGC-----CGGUCGGCUAAUAA ..((((.(((...((((..(((.....(.((((((((.....))))))))).)))....))))....)))....)))).(((-----(....))))..... ( -26.00, z-score = -0.14, R) >droEre2.scaffold_4820 7677996 88 + 10470090 --------UUGGCUGAAUGGCAGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGACGCAAACACGAGC-----CAGUCGGCUAAUAA --------((((((((.((((.....((((((......)))))).((((((.(.(((.......))).).))..))))..))-----)).))))))))... ( -29.10, z-score = -2.47, R) >droAna3.scaffold_12911 4920637 84 - 5364042 ------------GGGAGUGGCUGGCAGGAUAUGCUCCAAUGUCCGGAGUGCAUGUAAAUUUCAAUUAGAAGCAAACACGAGC-----CGGGCUGCUAAUAA ------------...((..((((((.((((((......))))))...(((..(((....(((.....))))))..)))..))-----).)))..))..... ( -24.80, z-score = -0.81, R) >dp4.chr2 2086805 86 - 30794189 ---------------GAACACACAGAGGAUAUGCUCGAGUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCACACACACGUUCCAGCUGCCGUCUAAUAA ---------------........(((((....(((.((((((...((((((((.(((.......))).))))))))..)))))).)))..)).)))..... ( -25.40, z-score = -2.08, R) >droPer1.super_7 2254588 86 - 4445127 ---------------GAACACACAGAGGAUAUGCUCGAGUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCACACACACGUUCCAGCUGCCGUCUAAUAA ---------------........(((((....(((.((((((...((((((((.(((.......))).))))))))..)))))).)))..)).)))..... ( -25.40, z-score = -2.08, R) >droWil1.scaffold_181089 8008171 84 - 12369635 AAAGAGGAUGAAGCGGUUGGCAGACAGGAUAUGCUAACAUGUACAUGGGAUAUUUAAAUUACAGGCACACGAGACAACUAAUAA----------------- .....((.((...(((((((((.........))))))).(((...((..((......))..)).)))..))...)).)).....----------------- ( -12.60, z-score = -1.27, R) >consensus ______G_U_GGCUGGAAGGCAGUCAGGAUAUGCUGGAAUGUCCGGUGUGCAUGUAAAUUUCAAUUAGAUGCAAACACGAGC_____CGGUCGGCUAAUAA ..........................((((((......)))))).((.(((.(.(((.......))).).))).))......................... ( -8.45 = -8.48 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:19 2011