| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,206,488 – 25,206,540 |
| Length | 52 |
| Max. P | 0.606660 |
| Location | 25,206,488 – 25,206,540 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 96.79 |
| Shannon entropy | 0.06250 |
| G+C content | 0.34526 |
| Mean single sequence MFE | -5.93 |
| Consensus MFE | -5.87 |
| Energy contribution | -5.90 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.10 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606660 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25206488 52 - 27905053 GUACUUGUGUUGUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCAAACG .....((((..((((((.........))))))....))))............ ( -6.70, z-score = -1.24, R) >droSim1.chr3R 24881349 52 - 27517382 GUACUUGUGUUGUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCAAACG .....((((..((((((.........))))))....))))............ ( -6.70, z-score = -1.24, R) >droSec1.super_4 4066857 52 - 6179234 GUACUUGUGUUGUUGAGCAACAUUUUUUCAAUUUUCCACAUAAUUCCAAACG (.....((((((.....)))))).....)....................... ( -5.20, z-score = -0.36, R) >droYak2.chr3R 7552315 52 + 28832112 GUACUUGUGUUGUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCAAACG .....((((..((((((.........))))))....))))............ ( -6.70, z-score = -1.24, R) >droEre2.scaffold_4820 7655433 52 + 10470090 GUACUUGUGUUGUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCAAACG .....((((..((((((.........))))))....))))............ ( -6.70, z-score = -1.24, R) >droAna3.scaffold_12911 4898972 50 - 5364042 GUACUUGUA--GUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCGAACG .....((((--((((((.........)))))))....)))............ ( -3.60, z-score = -0.11, R) >consensus GUACUUGUGUUGUUGAGCAACAUUUUCUCAAUUUUCCACAUAAUUCCAAACG .....((((..((((((.........))))))....))))............ ( -5.87 = -5.90 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:18 2011