| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,200,502 – 25,200,610 |
| Length | 108 |
| Max. P | 0.840617 |
| Location | 25,200,502 – 25,200,610 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.74 |
| Shannon entropy | 0.18021 |
| G+C content | 0.49668 |
| Mean single sequence MFE | -31.62 |
| Consensus MFE | -29.00 |
| Energy contribution | -28.84 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.840617 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25200502 108 + 27905053 GCACUUGCCG-UUCGGCAUUGGAUUUGGUUUCGGUUUUGCCUUCGCUUUUGCCUUUGCAUUUGGCGGGUUAUCAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC (((((((.((-(..((((..((....(((.........)))....))..))))...))...((((((((((....)))))).)))).........).)))))))..... ( -33.50, z-score = -1.42, R) >droSim1.chr3R 24875397 108 + 27517382 GCACUUGCCG-UUCGGCAUUGGAUUUGGUUUCGGUUUUGCCUUCGCUUUUGCCUUUGCAUUUGGCGGGUUAUCAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC (((((((.((-(..((((..((....(((.........)))....))..))))...))...((((((((((....)))))).)))).........).)))))))..... ( -33.50, z-score = -1.42, R) >droSec1.super_4 4061515 108 + 6179234 GCACUUGCCG-UUCGGCAUUGGAUUUGGUUUCGGUUUUGCCUUCGCUUUUGCCUUUGCAUUUGGCGGGUUAUCAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC (((((((.((-(..((((..((....(((.........)))....))..))))...))...((((((((((....)))))).)))).........).)))))))..... ( -33.50, z-score = -1.42, R) >droYak2.chr3R 7546209 91 - 28832112 GCACUUGCCGGUUCGGUAUUGGAUUUGGUUU------------------UGCCUUUGCAUUUGGCGGGUUAUCAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC (((((((.((((...(((..((.........------------------..))..)))...((((((((((....)))))).))))......)))).)))))))..... ( -28.50, z-score = -1.33, R) >droEre2.scaffold_4820 7649488 90 - 10470090 GCACUUGCCG-UUCGGCAUUGGAUUUGGUUU------------------UGCCUUUGCAUUUGGCGGGUUAUUAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC (((((((((.-...)))....(((.((((((------------------(((....)))..((((((((((....)))))).)))).))))))..)))))))))..... ( -29.10, z-score = -1.63, R) >consensus GCACUUGCCG_UUCGGCAUUGGAUUUGGUUUCGGUUUUGCCUUCGCUUUUGCCUUUGCAUUUGGCGGGUUAUCAGUGGCCCGGCCAUAAAUCACUGUCAAGUGUCAUUC ((((((((((...))))....(((.((((((..................(((....)))..((((((((((....)))))).)))).))))))..)))))))))..... (-29.00 = -28.84 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:17 2011