| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,199,946 – 25,199,998 |
| Length | 52 |
| Max. P | 0.594896 |
| Location | 25,199,946 – 25,199,998 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 96.15 |
| Shannon entropy | 0.05298 |
| G+C content | 0.42308 |
| Mean single sequence MFE | -9.63 |
| Consensus MFE | -9.81 |
| Energy contribution | -9.37 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.67 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25199946 52 + 27905053 AGGACAUACAUGUCCAGCUUGACAAGCUUGAAUUUAGAUUUAGAUUUCCCCU .(((((....)))))((((.....)))).(((((((....)))))))..... ( -9.30, z-score = -1.45, R) >droSec1.super_4 4060973 52 + 6179234 AGGACAUGCAUGUCCAGCUUGACAAGCUCGAAUUUAGAUUUGGAUUUCCCCU .(((((....)))))((((.....))))(((((....))))).......... ( -9.80, z-score = -0.28, R) >droSim1.chr3R 24874850 52 + 27517382 AGGACAUGCAUGUCCAGCUUGACAAGCUCGAAUUUAGAUUUGGAUUUCCCCU .(((((....)))))((((.....))))(((((....))))).......... ( -9.80, z-score = -0.28, R) >consensus AGGACAUGCAUGUCCAGCUUGACAAGCUCGAAUUUAGAUUUGGAUUUCCCCU .(((((....)))))((((.....))))(((((....))))).......... ( -9.81 = -9.37 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:15 2011