| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,185,454 – 25,185,544 |
| Length | 90 |
| Max. P | 0.799784 |
| Location | 25,185,454 – 25,185,544 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 77.39 |
| Shannon entropy | 0.40927 |
| G+C content | 0.46665 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -12.92 |
| Energy contribution | -12.81 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25185454 90 - 27905053 ------------GGCCAACUGGCAGCGUUUCCGUUGCCUUUCACC-----AAACGGAAGUUGGGCGCACUAAACGAUUUGCUU-----GUUUCGUGUGCUGAA--AUAUUUAGG-- ------------..((....(((((((....)))))))(((((((-----((.(....)))))((((((.((((((.....))-----)))).))))))))))--)......))-- ( -32.90, z-score = -2.98, R) >droPer1.super_7 2210728 90 - 4445127 -----------------GCAGGCAGCGCUUCCGUUGCCUUUCACC-----AAACGGAAGUUGAGCGCACUAAACGAUUUGCUUGUUUCGUUUCGUGUGCUGAA--AUAUUUAAG-- -----------------..((((((((....))))))))(((...-----.(((....))).(((((((.((((((..........)))))).))))))))))--.........-- ( -32.10, z-score = -3.31, R) >dp4.chr2 2042998 95 - 30794189 ------------GUGUGGCAGGCAGCGCUUCCGUUGCCUUUCACC-----AAACGGAAGUUGAGCGCACUAAACGAUUUGCUUGUUUCGUUUCGUGUGCUGAA--AUAUUUAAG-- ------------(.((((.((((((((....)))))))).)))))-----.(((....))).(((((((.((((((..........)))))).)))))))...--.........-- ( -36.60, z-score = -3.79, R) >droAna3.scaffold_12911 4877737 87 - 5364042 ---------------GGAGAGGCAGCGUUUCCGUUGCCUUUCAGC-----AAACGGAAGUAGAGUGCUCUAAACGAUUUGCUU-----GUUUCGUGUACUAAA--AUAUUUAAG-- ---------------.(((((((((((....)))))))))))...-----..((....))..(((((.(.((((((.....))-----)))).).)))))...--.........-- ( -29.10, z-score = -3.32, R) >droEre2.scaffold_4820 7631968 90 + 10470090 ------------GGCCAACUGGCAGCGUUUCCGUUGCCUUUCACC-----AAACGGAAGUUGGGCGCACUAAACGAUUUGCUU-----GUUUCGUGUGCUGAA--AUAUUUAGG-- ------------..((....(((((((....)))))))(((((((-----((.(....)))))((((((.((((((.....))-----)))).))))))))))--)......))-- ( -32.90, z-score = -2.98, R) >droYak2.chr3R 7530817 102 + 28832112 UGUGUGUGUGUGGGCCAACUGGCAGCGUUUCCGUUGCCUUUCACC-----GAACGGAAGUUGGGCGCACUAAACGAUUUGCUU-----GUUUCGUGUGCUGAA--AUAUUUAGG-- ..............(((((((((((((....))))))).....((-----....)).))))))((((((.((((((.....))-----)))).))))))....--.........-- ( -33.30, z-score = -1.23, R) >droSec1.super_4 4045607 90 - 6179234 ------------GGCCAACUGGCAGCGUUUCCGUUGCCUUUCACC-----AAACGGAAGUUGGGCGCACUAAACGAUUUGCUU-----GUUUCGUGUGCUGAA--AUAUUUAGG-- ------------..((....(((((((....)))))))(((((((-----((.(....)))))((((((.((((((.....))-----)))).))))))))))--)......))-- ( -32.90, z-score = -2.98, R) >droSim1.chr3R 24860393 90 - 27517382 ------------GGCCAACUGGCAGCGUUUCCGUUGCCUUUCACC-----AAACGGAAGUUGGGCGCACUAAACGAUUUGCUU-----GUUUCGUGUGCUGAA--AUAUUUAGG-- ------------..((....(((((((....)))))))(((((((-----((.(....)))))((((((.((((((.....))-----)))).))))))))))--)......))-- ( -32.90, z-score = -2.98, R) >droWil1.scaffold_181089 7958653 85 - 12369635 -----------------GUUGGCAGCAUUUCCGUUGGCUUUCAAC-----AAACGGAAGCAAAGUGCACUAAACGAUUUGCUU-----GUUUCGUUUGCUGAA--AUAUUUAAA-- -----------------...(.((((......)))).)(((((.(-----(((((((((((((.((.......)).)))))).-----..)))))))).))))--)........-- ( -21.40, z-score = -1.11, R) >droMoj3.scaffold_6540 26620559 91 - 34148556 -----------------GCAGAGUUUCCUUCCGUUGCCUUUUGCCAC-AAAAACGGAAGCAAGGCACACUAAACGAUUUGCUU-----GUCUCGUUUGCUGAA--GUAUUUUGCAG -----------------(((((((...((((.((((((((...((..-......))....)))))).))(((((((.......-----...)))))))..)))--).))))))).. ( -23.20, z-score = -0.86, R) >droGri2.scaffold_14624 3429789 93 - 4233967 -----------------GCAACGUUUCCUUCCGUUGCC-AUUGCCACAAAAAACGGAAGCGAGCCGCACUAAGCGAUUUGCUU-----GUCUCGCAUGCUGAAUGCUAUUUUCAAA -----------------((((.((((.((((((((...-............)))))))).))))(((.....)))..))))..-----.....((((.....)))).......... ( -23.26, z-score = -0.76, R) >consensus ____________G__CAACUGGCAGCGUUUCCGUUGCCUUUCACC_____AAACGGAAGUUGGGCGCACUAAACGAUUUGCUU_____GUUUCGUGUGCUGAA__AUAUUUAGG__ .....................((....((((((((................))))))))....))(((....((((...((.......)).)))).)))................. (-12.92 = -12.81 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:14 2011