| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,181,827 – 25,181,925 |
| Length | 98 |
| Max. P | 0.695801 |
| Location | 25,181,827 – 25,181,925 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 78.14 |
| Shannon entropy | 0.32633 |
| G+C content | 0.33753 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -12.78 |
| Energy contribution | -12.28 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695801 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25181827 98 + 27905053 UCAAUAUUAAAGUGCUAAAUGAAAGCCACAAAAGAGAGAAAAAAAAAAAGAAACCAGAUAUUCAAAGGCAGAUAUUCCUGGUGUCUUUGGCACAAACU ...........(((((...((.....))..................(((((.((((((((((........)))))..))))).))))))))))..... ( -16.70, z-score = -1.41, R) >droEre2.scaffold_4820 7628400 78 - 10470090 UCAAUAUUAAAGUGCUAACUGAAAGGCC------------AAACAAAAAA--------UAUUCAAAGCCAAAUACUCCUGGUGUCUUUGGCGCAAACU ...........(((((((((....))..------------..........--------........((((........))))....)))))))..... ( -12.30, z-score = -0.66, R) >droYak2.chr3R 7527140 78 - 28832112 UCAAUAUUAAAGAGCUAACUCAAAGGUG------------AAAAAAAAAG--------UAUUCAAAGCCAGAUAUUUCUGGUGUCUUUGGCACAAACU .............(((((........((------------((........--------..))))..((((((....))))))....)))))....... ( -13.00, z-score = -1.02, R) >droSim1.chr3R 24856789 93 + 27517382 UCAAUAUUAAAGUGCUAACUGAAAGCCACAAAAGA-----AGAAAAAAAGUAACCAGAUAUUCAAAGGCAGAUAUUCCUGGUGUCUUUGGCACAAACU ...........(((((((......(((........-----..........................)))((((((.....)))))))))))))..... ( -14.68, z-score = -0.42, R) >consensus UCAAUAUUAAAGUGCUAACUGAAAGCCA____________AAAAAAAAAG________UAUUCAAAGCCAGAUAUUCCUGGUGUCUUUGGCACAAACU ...........(((((((......(((.......................................)))((((((.....)))))))))))))..... (-12.78 = -12.28 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:09 2011