| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,177,902 – 25,177,992 |
| Length | 90 |
| Max. P | 0.646259 |
| Location | 25,177,902 – 25,177,992 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 88.59 |
| Shannon entropy | 0.21792 |
| G+C content | 0.43144 |
| Mean single sequence MFE | -20.72 |
| Consensus MFE | -17.97 |
| Energy contribution | -18.14 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646259 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25177902 90 - 27905053 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCU------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.41, R) >droSim1.chr3R 24852882 90 - 27517382 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.47, R) >droSec1.super_4 4038233 90 - 6179234 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGGUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -18.90, z-score = -0.72, R) >droYak2.chr3R 7523027 90 + 28832112 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.47, R) >droEre2.scaffold_4820 7624507 90 + 10470090 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.47, R) >droAna3.scaffold_12911 4870012 96 - 5364042 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCCCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCAGAAUCGCCC------------------ .((((((.............((((((.((....)).))))))......(((((..(((........)))...)).)))..))))))..........------------------ ( -19.30, z-score = -1.38, R) >dp4.chr2 2034290 90 - 30794189 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.47, R) >droPer1.super_7 2201975 90 - 4445127 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC------------------------ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))...------------------------ ( -19.40, z-score = -1.47, R) >droWil1.scaffold_181089 7949460 90 - 12369635 CGCUUACAGAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCCCAAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCAGCA------------------------ .((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....))))))....------------------------ ( -16.80, z-score = -0.95, R) >droVir3.scaffold_12822 2497541 113 - 4096053 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCCCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAACGACGAAGGUGG-CCGUCCAAGGGGCGCC ((.((((.............((((((.((....)).))))))......(((((..(((........)))...)).)))..)))).)).....((((.-((.......)).)))) ( -22.70, z-score = 0.85, R) >droMoj3.scaffold_6540 26607260 114 - 34148556 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCCCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGACGAAGGUGGCCCGUCCAAGGGGCGCC (((((((.............((((((.((....)).))))))......(((((..(((........)))...)).)))..))))))).....((((.(((......))).)))) ( -33.70, z-score = -2.18, R) >droGri2.scaffold_14624 3412104 94 - 4233967 CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCCCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGACGAAGG-------------------- (((((((.............((((((.((....)).))))))......(((((..(((........)))...)).)))..))))))).......-------------------- ( -20.80, z-score = -2.16, R) >consensus CGCUUACACAACAGGAUAACAAGAUGAGCACUCGUACAUUUUUAAUACGCUCGAGAUACAAUAAUUUAUAUGCGUGGCACGUAAGCGCCC________________________ (((((((.............((((((.((....)).))))))...(((((...((((......))))....)))))....)))))))........................... (-17.97 = -18.14 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:07 2011