| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,175,771 – 25,175,829 |
| Length | 58 |
| Max. P | 0.989523 |
| Location | 25,175,771 – 25,175,829 |
|---|---|
| Length | 58 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 96.53 |
| Shannon entropy | 0.04750 |
| G+C content | 0.45342 |
| Mean single sequence MFE | -15.57 |
| Consensus MFE | -15.23 |
| Energy contribution | -15.57 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.37 |
| SVM RNA-class probability | 0.989523 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25175771 58 + 27905053 CACCUCAGAAUCUGCCGUCUAAACAAGCUGGGACUAAUCCUGCCUUCGAUUUUGAUGA ..(.((((((((....((....))..((.((((....))))))....)))))))).). ( -11.30, z-score = -0.98, R) >droSec1.super_4 4036125 57 + 6179234 CAC-UCAGAAUCUUCCGUCUAAACAAGCUGGGACUAAUCCUGGCUUCGAUUUUGAUGA ((.-((((((((....((....))((((..(((....)))..)))).)))))))))). ( -17.70, z-score = -3.38, R) >droSim1.chr3R 24850742 57 + 27517382 CAC-UCAGAAUCUGCCGUCUAAACAAGCUGGGACUAAUCCUGGCUUCGAUUUUGAUGA ((.-((((((((....((....))((((..(((....)))..)))).)))))))))). ( -17.70, z-score = -3.19, R) >consensus CAC_UCAGAAUCUGCCGUCUAAACAAGCUGGGACUAAUCCUGGCUUCGAUUUUGAUGA ..(.((((((((....((....))(((((((((....))))))))).)))))))).). (-15.23 = -15.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:06 2011