| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,157,321 – 25,157,412 |
| Length | 91 |
| Max. P | 0.507938 |
| Location | 25,157,321 – 25,157,412 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 64.78 |
| Shannon entropy | 0.68410 |
| G+C content | 0.38007 |
| Mean single sequence MFE | -24.19 |
| Consensus MFE | -7.08 |
| Energy contribution | -6.19 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.86 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.507938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25157321 91 + 27905053 AAACG-----CAAUUUUCGCCUAUGAGUGGCGAGAACACUUCUGGCCACAAAUUGAUACCAGCAAGUUUUCUUUAUUUCGAGAGGCUU-----AACAAUAA-------------- ....(-----(...(((((((.......)))(((((.((((((((.............)))).)))).)))))......)))).))..-----........-------------- ( -19.62, z-score = -1.25, R) >droSim1.chr3R 24832040 105 + 27517382 AAACG-----CAAUUUUCGCCUAUGAGUGGCGAGAACUCUUCUGGCCACAAAUUGAUACCAGCAAGUUUUCUUUAUUUCGAGAGGCUU-----AACAAUAAUUGCGUAACUUAAA ..(((-----(((((...((((....(((((.(((.....))).)))))...((((.......(((....)))....)))).))))..-----......))))))))........ ( -26.10, z-score = -2.22, R) >droSec1.super_4 4017940 105 + 6179234 AAACG-----CAAUUUUCGCCUAUGAGUGGCGAGAACUCUUCUGGCCACAAAUUGAUACCAGCAAGUUUUCUUUAUUUCGAGAGGCUU-----AAAAAUAAUUGCGUAACUUAAA ..(((-----(((((...((((....(((((.(((.....))).)))))...((((.......(((....)))....)))).))))..-----......))))))))........ ( -26.10, z-score = -2.16, R) >droYak2.chr3R 7500843 105 - 28832112 AAACG-----CAAUUUUCGGCUAUGAGUGGCGAGAACUCUUCUGGCCAGAAAUUGAUAGCUGCAAGUUUUCUUUAUUUCGAGAGGCUC-----AACAAUAAUUGCGUAACUAAAA ..(((-----(((((..(((((((.((((((.(((.....))).))))....)).)))))))..(((((.(((......)))))))).-----......))))))))........ ( -28.30, z-score = -1.81, R) >droEre2.scaffold_4820 7604431 104 - 10470090 AAACG-----CAAUUUUCGCCUAUGAGUGGCGAGAACUCUUCUGGCCAGAAAUUGAUACCAGCAAGUUUUCCUUAUUUCAA-AGGCUU-----AACAAUAAUUGCUUAACUUGAA ....(-----(((((...((((.((((.((.(((((((...((((.............))))..)))))))))...)))).-))))..-----......)))))).......... ( -24.22, z-score = -1.80, R) >droAna3.scaffold_12911 4850211 91 + 5364042 AAAUG-----CAUCAUUUAUUUAUUACCAAUAAAGAGUCUUAU--UCUCAGAGUCAUAGUCUCUGAAUCUC---AUCCCAAGAGGGAU-----GAGAG-AUUUGAAA-------- .....-----........................(((((....--..((((((.......)))))).((((---(((((....)))))-----)))))-))))....-------- ( -25.70, z-score = -3.00, R) >droVir3.scaffold_12822 2469786 115 + 4096053 AAGCGUCUCUCAGCGUGUGGCCAAGUUUGGCAAACAAUAGGCUUCCAAGGACCUUAACUCCUCAAUCUAAUCGAAUUUCAUCUGGCUUGAUUAAACAAUAUUUACAGACAUGAGC (((.((((...(((.(((.((((....)))).....))).))).....))))))).....((((.((.....))......((((....(((........)))..))))..)))). ( -19.30, z-score = 1.06, R) >consensus AAACG_____CAAUUUUCGCCUAUGAGUGGCGAGAACUCUUCUGGCCACAAAUUGAUACCAGCAAGUUUUCUUUAUUUCGAGAGGCUU_____AACAAUAAUUGCGUAACUUAAA ..............(((((((.......)))))))................................................................................ ( -7.08 = -6.19 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:02 2011