| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,151,080 – 25,151,202 |
| Length | 122 |
| Max. P | 0.627251 |
| Location | 25,151,080 – 25,151,202 |
|---|---|
| Length | 122 |
| Sequences | 6 |
| Columns | 147 |
| Reading direction | reverse |
| Mean pairwise identity | 75.54 |
| Shannon entropy | 0.43535 |
| G+C content | 0.61677 |
| Mean single sequence MFE | -37.48 |
| Consensus MFE | -20.60 |
| Energy contribution | -23.22 |
| Covariance contribution | 2.61 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.627251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25151080 122 - 27905053 GCAGCCAUUGUUGGCAGAGGAGCACGCGACUCG--GGGCCACG-CCCCCUCCUGCUGC-CCCCUUUAACCCAUUGCCUGUUUAAUGCAAUGUCUGCUAACCUGAGCGUUCAGCCCAUCCACCCACC--------------------- ...((((..(((((((((((.(((.(((....(--((((...)-))))....))))))-.))........((((((.(.....).))))))))))))))).)).))....................--------------------- ( -38.40, z-score = -1.88, R) >droAna3.scaffold_12911 4844399 139 - 5364042 GCAGCAAUUUUUGGCAAGGGCGCACGCGAAUCCAAGGACUCUGCCCCCCUU--------CCCCGGCCUCCCAUUACCUAUUUAAUGCAAUGUCUGCUAACCUGUGCGCCCACCCAAGCCACCGCCUCCUGGCAACCACCCACCCACC .........(((((...((((((((((((.((....)).)).)).......--------....(((....(((((......)))))....))).........))))))))..))))).....(((....)))............... ( -34.00, z-score = -0.95, R) >droEre2.scaffold_4820 7598300 112 + 10470090 GCAGC-AUUGUUGGCAGAGGCGCACGCCACUUGGAGGGCCACG-CCCCCUCUCGCUGCGCCCCUUUAACCCAUUACCUGUUUAAUGCAAUGCCUGCUAACCUGCGCCACCCACC--------------------------------- ((((.-...((((((((.((((((.((.....((.((((...)-)))))....)))))))).........(((((......)))))......))))))))))))..........--------------------------------- ( -39.40, z-score = -2.58, R) >droYak2.chr3R 7494466 120 + 28832112 GCAGCAAUUGUUGGCAGAGGCGCACGCGACUCGGAGGGCCACG-CCCCCUCAUGCUGCGCCCCUUUAACCCAUUACCCGCUUAAUGCAAUGCCUGCUAACCUGUGCGCCCGGCCACCCACC-------------------------- ((.(((...((((((((.((((((.(((....((.((((...)-)))))...))))))))).................((.....)).....))))))))...)))))..((....))...-------------------------- ( -41.90, z-score = -1.52, R) >droSec1.super_4 4010951 125 - 6179234 GCAGCCAUUGUUGGCAGAGGCGCACGCGACUCG-AGAGCCACGCCCCCCUCCUGCUGCGCCCCUUUAACCCAUUACCUGUUUAAUGCAAUGUCUGCUAACCUGAGCGCCCAGCCAAGCCACCCACC--------------------- ((.((((..(((((((((((((((.(((....(-((............))).))))))))).........(((((......))))).....))))))))).)).))))..................--------------------- ( -31.80, z-score = -0.80, R) >droSim1.chr3R 24825378 125 - 27517382 GCAGCUAUUGUUGGCAGAGGCGCACGCGACUCG-AGGGCCACGCCCCCCUACUGGUGCGCCCCUUUAACCCAUUACCUGUUUAAUGCAAUGUCUGCUAACCUGAGCGCCCAGCCCAGCCACCCACC--------------------- ((.(((...((((((((((((((((.((....(-.((((...)))).)....))))))))).........(((((......))))).....)))))))))...)))))..................--------------------- ( -39.40, z-score = -1.40, R) >consensus GCAGCAAUUGUUGGCAGAGGCGCACGCGACUCG_AGGGCCACG_CCCCCUCCUGCUGCGCCCCUUUAACCCAUUACCUGUUUAAUGCAAUGUCUGCUAACCUGAGCGCCCAGCCAAGCCACCCACC_____________________ ...((....(((((((((((((((.(((......((((........))))..))))))))).........(((((......))))).....)))))))))....))......................................... (-20.60 = -23.22 + 2.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:01 2011