| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,149,192 – 25,149,298 |
| Length | 106 |
| Max. P | 0.891920 |
| Location | 25,149,192 – 25,149,298 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 85.24 |
| Shannon entropy | 0.31209 |
| G+C content | 0.47029 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -21.54 |
| Energy contribution | -21.68 |
| Covariance contribution | 0.15 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25149192 106 - 27905053 GUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGCGGAAAGGCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCGGUUUUAACGGCGCUG- ..(((((((..(((((.((((---.(((....-----))).))))..((.((....)).)))))))...((...(((((.(((((.........)))))))))).)))))))))- ( -35.20, z-score = -2.87, R) >droSim1.chr3R 24823519 106 - 27517382 GUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGUGGAAAGCCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCGGUUUUAACGGCGCUG- ..(((((((....((((..((---....)).)-----)))..((..(((((((((.((.(((((.....)))))...)).(((........))).))))))))).)))))))))- ( -33.50, z-score = -2.41, R) >droSec1.super_4 4009133 106 - 6179234 AUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGCGGAAAGCCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCGGUUUUAACGGCGCUG- ..(((((((..(((((.((((---.(((....-----))).))))...((((....).))))))))...((...(((((.(((((.........)))))))))).)))))))))- ( -34.00, z-score = -2.50, R) >droYak2.chr3R 7492577 106 + 28832112 GUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGCGGAAAGCCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCGCUG- ..(((((((..(((((.((((---.(((....-----))).))))...((((....).))))))))...((...(((((.(((((.........)))))))))).)))))))))- ( -34.70, z-score = -2.94, R) >droEre2.scaffold_4820 7596409 106 + 10470090 GUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGCGGAAAGCCGAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUUAAAGGCGCUG- ..(((((((..(((((.((((---.(((....-----))).))))...((((....).))))))))........(((((.(((((.........))))))))))...)))))))- ( -34.10, z-score = -3.09, R) >droAna3.scaffold_12911 4842552 106 - 5364042 GUCGGCGCCAUUGGCCACGUC---AAUUGAAU-----GGUAGGUGGAAAGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUCAGCGGUACUG- ...(((.((((..((((..((---....)).)-----)))..))))...)))...((((.((((.....))))((((...(((((.........))))).)))).....)))).- ( -26.00, z-score = -0.81, R) >droMoj3.scaffold_6540 26570461 112 - 34148556 GCUGGCGCCG-AGGCCAGGUCC-UGGUUACGUUGAAUGGUAGGCGCAACGCCCAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCGCUG- ...(((((((-.((((((...)-)))))..(((((...((.(((.((((((.....)))))))))))...)))))((((.(((((.........)))))))))...))))))).- ( -40.90, z-score = -2.60, R) >droVir3.scaffold_12822 2459496 112 - 4096053 UCUGGCGCCG-AGGCCGGGGCU-AGGAUACGUUGAAUGGUAGGCGCAACGCCCAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUCAACGGCGCUG- ...(((((((-.(((....)))-..((.(((((((...((.(((.((((((.....)))))))))))...))))).....(((((.........))))))).))..))))))).- ( -39.80, z-score = -2.34, R) >droGri2.scaffold_14624 3373241 109 - 4233967 CGUGGCGCCACAGAGCAGAUAUACUGUUGAAU-----GGUAGGCGCAACACCAAAAGUGUUGGCCAUAAGUCAGCAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCACUG- .(((.((....(((((........((((((..-----.((.(((.((((((.....)))))))))))...))))))....(((((.........))))))))))..)).)))..- ( -29.80, z-score = -1.82, R) >dp4.chr2 2002468 111 - 30794189 ACGGGCGCCA-GGGCCACGUC---AAUUGAAUAGGUAGGUAGGCGCAGAGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCGCGGU ....(((((.-.((((((.((---....))...).......(((.....)))........)))))....((...(((((.(((((.........)))))))))).)))))))... ( -30.30, z-score = -1.51, R) >droPer1.super_7 2170235 111 - 4445127 ACGGGCGCCA-GGGCCACGUC---AAUUGAAUAGGUAGGUAGGCGCAGAGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCGCGGU ....(((((.-.((((((.((---....))...).......(((.....)))........)))))....((...(((((.(((((.........)))))))))).)))))))... ( -30.30, z-score = -1.51, R) >droWil1.scaffold_181089 7915632 105 - 12369635 UCUGGCGCCA-GGGCCACAUC---AAUUGAAU-----GGUAGGCGCAACGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUCAACGGCGGUG- ....(((((.-..((((..((---....)).)-----))).)))))..((((........((((.....))))((((...(((((.........))))).))))...))))...- ( -29.90, z-score = -1.85, R) >consensus GUCGGCGCCAUUGGCCACGUC___AAUUGAAU_____GGUAGGCGCAAAGCCAAAAGUGUUGGCCAUAAGUCAGAAAACAUGAAUAACAAAUCAAUUCAGUUUUAACGGCGCUG_ ..(((((((...(((((.............((......)).(((.....)))........)))))..........((((.(((((.........)))))))))....))))))). (-21.54 = -21.68 + 0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:54:01 2011