| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,044,017 – 25,044,101 |
| Length | 84 |
| Max. P | 0.806027 |
| Location | 25,044,017 – 25,044,101 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 60.98 |
| Shannon entropy | 0.65889 |
| G+C content | 0.38850 |
| Mean single sequence MFE | -22.44 |
| Consensus MFE | -8.72 |
| Energy contribution | -10.20 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25044017 84 - 27905053 ----------AACGCACAUACAUACGUACAUAUGUAGGUACAUGUGUAUGUGUCGUCUUGUUGUCGUUGGCAACAACAACUGCACCGGAAAAAA ----------.(((((((((((((.((((........)))).)))))))))).)))..(((.((.((((....)))).)).))).......... ( -29.30, z-score = -2.73, R) >droYak2.chr3R 7378714 76 + 28832112 ----------AAGGUACAUACAUAUGUGCAUACAU------GCAUGUGUAUGUCGUCUUGUUGUCGUUGGCAGCU--AGGUGCACUGGGAAAAA ----------..(((((((((((((((........------))))))))))))(..((.(((((.....))))).--))..).)))........ ( -22.40, z-score = -0.84, R) >droSec1.super_4 3906800 82 - 6179234 ----------AACGCACAUACAUACGUACAUAUGUAGGUAAAUGUGUAUGUGUUGUCAUCUUGUCGUUGGCAAAA--AGGUUCACUGGAAACAA ----------...(((((((((((..(((........)))..)))))))))))(((((.(.....).)))))...--........((....)). ( -21.70, z-score = -1.56, R) >droSim1.chr3R 24714912 82 - 27517382 ----------AACGCACAUACAUACGUACAUGUGUAGGUAAAUGUGUAUGUGUCGUCAUCUUGUCGUUGGCAACA--AGGUUCACUGGAAAAAA ----------.(((((((((((((..(((........)))..)))))))))).)))..(((.(((.(((....))--).)...)).)))..... ( -23.40, z-score = -1.93, R) >droMoj3.scaffold_6540 26450747 90 - 34148556 CACUGGCUAAAAGAAUAAUACAAAAAAAAAUAAAAAAAACAAUG-AAAAGUUUUUUUUGGUUGGCCUAGGUUUCAAUGCCCUUGCAGAGCA--- ..((((((((....................((((((((((....-....)))))))))).)))))).))((((...(((....))))))).--- ( -15.40, z-score = -0.12, R) >consensus __________AACGCACAUACAUACGUACAUAUGUAGGUAAAUGUGUAUGUGUCGUCUUGUUGUCGUUGGCAACA__AGGUUCACUGGAAAAAA .............((((....((((((((((((........))))))))))))......(((((.....))))).....))))........... ( -8.72 = -10.20 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:53 2011