| Sequence ID | dm3.chr3R |
|---|---|
| Location | 25,018,259 – 25,018,354 |
| Length | 95 |
| Max. P | 0.531775 |
| Location | 25,018,259 – 25,018,354 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 74.82 |
| Shannon entropy | 0.44378 |
| G+C content | 0.52971 |
| Mean single sequence MFE | -16.32 |
| Consensus MFE | -9.48 |
| Energy contribution | -11.68 |
| Covariance contribution | 2.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.531775 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 25018259 95 - 27905053 -----CCCGUUUAUGCUUCGAUUUGCCGCCCUAUACGCCAUAUCCACCCCACAGCCC--CACGCCACCGCUCAGGCAAAUGCAAAAUCAUUUGCCAUCGAAA -----...........((((((..((.((.......))...............((..--...))....))...((((((((......)))))))))))))). ( -16.00, z-score = -1.08, R) >droSim1.chr3R 24689279 94 - 27517382 -----CCCGUUUAUGCUUCGAUUUGCCGCCCUAUAGGCCAAAUCCACACC-CAGGCC--CACUCCACCCCUCCGGCAAAUGCAAAAUCAUUUGCCAUCGAAA -----...........((((((.............((((...........-..))))--..............((((((((......)))))))))))))). ( -21.52, z-score = -2.65, R) >droSec1.super_4 3881416 96 - 6179234 -----CCCGUUUAUGCUUCGAUUUGCCGCCCUAUGGGCCAAAUCCACCCC-CAGCCCCACACUCCACAGCUCAGGCAAAUGCAAAAUCAUUUGCCAUCGAAA -----...........(((((((((..((((...))))))))))......-......................((((((((......))))))))...))). ( -21.90, z-score = -1.84, R) >droEre2.scaffold_4820 7457808 91 + 10470090 -----CCCGCUUAUGCUUCGAUUUGCCGCCCCACAGACCA----CGCCCCCCAUACC--CUCUCCGCUCUUCAGGCAACUGCAAAAUCAUUUGCCAUCGAAA -----...((....))(((((((((((.............----.............--..............)))))..(((((....))))).)))))). ( -13.10, z-score = -0.83, R) >droAna3.scaffold_13340 9472618 84 + 23697760 AUUUGCCCGUUUAUGCUACCAUUUACCGCCCUG-----------AUCCGUGCAA-----CCGCCCGUUCCUU--GCAACUGCAAAAUCAUUUGCCAUCCAAA .(((((..((..(((....)))..)).((...(-----------(..((.((..-----..)).)).))...--))....)))))................. ( -9.10, z-score = 0.07, R) >consensus _____CCCGUUUAUGCUUCGAUUUGCCGCCCUAUAGGCCA_AUCCACCCC_CAGCCC__CACUCCACCCCUCAGGCAAAUGCAAAAUCAUUUGCCAUCGAAA ................((((((.....(((.....)))...................................((((((((......)))))))))))))). ( -9.48 = -11.68 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:45 2011