| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,049,865 – 9,049,959 |
| Length | 94 |
| Max. P | 0.979444 |
| Location | 9,049,865 – 9,049,959 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.47 |
| Shannon entropy | 0.31858 |
| G+C content | 0.42187 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -18.28 |
| Energy contribution | -18.90 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.979444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9049865 94 + 23011544 CCCCUACUCGCGUU--UUUCCAUUCUGUUU-UAAGGCA--GCCUAAAAA-GUAUGCAGUCACAACUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUC .....(((((((..--........(((((.-...))))--)..(((((.-(((((((((....))))))))).)))))..........)))))))..... ( -23.40, z-score = -3.58, R) >droSim1.chr2L 8830319 94 + 22036055 CCCAUACUCGCGUG--UUUUCAUUCUGUUU-UAAGGCA--GCCUAAAAA-GUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUC .....(((((((..--........(((((.-...))))--)..(((((.-(((((((((....))))))))).)))))..........)))))))..... ( -23.70, z-score = -2.85, R) >droSec1.super_3 4516171 94 + 7220098 CCCAUACUCGCGUU--UUUCCAUUCUGUUU-UAAGGCA--GCCUAAAAA-GUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUC .....(((((((..--........(((((.-...))))--)..(((((.-(((((((((....))))))))).)))))..........)))))))..... ( -23.70, z-score = -3.37, R) >droYak2.chr2L 11709926 93 + 22324452 -CCCUGUUCGCGUU--UUUCCAUUCUGUUU-CAAGGCA--GCCUAAAAA-GUAUGCAGUCGCAGCUGCAUAUAUUUCGAAUCAGAUUUCGUGGUUUUUUC -......(((((..--.......((((.((-(.(((..--.))).....-(((((((((....))))))))).....))).))))...)))))....... ( -20.70, z-score = -1.88, R) >droEre2.scaffold_4929 9651186 95 + 26641161 CCCCAGCUCGCGUU--UUUCCAUUCUGUUUUCAAGGCA--GCCUAAAAA-GAAUGCAGUCGCAGCUGCAUAUAUUUUGAGCCAGAUUCCGUGGGUUUUUC .(((((((((((((--(((.....(((((.....))))--)......))-))))))....((....)).........)))).........))))...... ( -21.20, z-score = -0.36, R) >droAna3.scaffold_12943 389724 99 + 5039921 -CUCAACUUGGAUUGGUUUUUUUUUGGUUUGUAAAAAACUGCCUAAAAAAGUAUGCAGUCGCAGCUGCAUCCAUGUUGUGCCAAAUUCCCAGAGUUUGCC -..((((.((((..(((..(((((((.....)))))))..)))..........((((((....)))))))))).))))...(((((((...))))))).. ( -24.50, z-score = -1.28, R) >consensus CCCCUACUCGCGUU__UUUCCAUUCUGUUU_UAAGGCA__GCCUAAAAA_GUAUGCAGUCACAGCUGCAUAUAUUUUGUACCACAUUCCGUGGGUUUUUC .....(((((((.....................((((...)))).((((.(((((((((....))))))))).))))...........)))))))..... (-18.28 = -18.90 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:28 2011