| Sequence ID | dm3.chr2L |
|---|---|
| Location | 818,165 – 818,283 |
| Length | 118 |
| Max. P | 0.549168 |
| Location | 818,165 – 818,283 |
|---|---|
| Length | 118 |
| Sequences | 7 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 65.24 |
| Shannon entropy | 0.64745 |
| G+C content | 0.35117 |
| Mean single sequence MFE | -19.11 |
| Consensus MFE | -9.22 |
| Energy contribution | -9.12 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 818165 118 + 23011544 UAAAAGCAAAUUCAGUACGUAUAAAAUAAAACCUUAUUGAAGCCUUGUUCCUAAAUGAGUAUGUGUAUAAAUAAUGCACUACAUAAUGAUGGAACUCGGUUCGAAUUUAACUAGAUCC .......((((((...........(((((....)))))(((.((..(((((...((..(((.((((((.....)))))))))...))...)))))..))))))))))).......... ( -22.60, z-score = -2.25, R) >droPer1.super_1 7101843 94 + 10282868 -------------------UGGAGCCUUAAAUC-CGUUGCAGAC--AUUCGUA--UGCUUAUGUGUCUAAUAGAACCAUCCGAUGCUGGUCGAGCCAACCUUAAAGCCAUCUAAAUAC -------------------.(((........))-)(((((((((--(..((((--....)))))))))....((.(((........)))))..).))))................... ( -14.50, z-score = 0.79, R) >dp4.chr4_group3 5609678 94 + 11692001 -------------------UGGAGCCUUAAAUC-CGUUGCAGAC--AUACGUA--UGCUUAUGUGUCUAAUAGAACCAUCCGAUGCUGGUCGAGCCAACCUUAAAGCCAUCUAAAUAC -------------------.(((........))-)(((((((((--(((.(..--....).)))))))....((.(((........)))))..).))))................... ( -14.60, z-score = 0.74, R) >droEre2.scaffold_4929 874309 115 + 26641161 ---UCGCUAAUUCAGAACGUAUAAAAUAGAACCUUAUUAAAGUCUGGUUCCUUACUGAGCAUGUGUAUAAAUAAUGCGUUACAUAAUGAUGGAACUCGGUUUGAAUUAAACUAGAUCC ---....(((((((((............(((((..((....))..)))))....((((((((...........))))(((.(((....))).)))))))))))))))).......... ( -20.00, z-score = -0.51, R) >droYak2.chr2L 801686 115 + 22324452 ---UCGCAAGUUCAGUACGUAAAAAAUAGAACCUUAUUAAAGCCUUGUUCUUAACUGAGCAUGUGUAUAAAUAAUGCAUUACAUAAUGGUAGAACUCGGUUCGAAUUUAACUAGAUGC ---.((((.(((((((...........((((((((....)))....)))))..))))))).))))..........(((((......((((.(((.(((...))).))).))))))))) ( -18.62, z-score = 0.25, R) >droSec1.super_14 788549 118 + 2068291 UAAAAGCAAAUUCAGUACGUAUAAAAUAAAACAUUAUUGAACCCUUGUUCCUAACUGAGCAUGUGUAUAAAUAAUGCACUACAAAAUGAUGGAACUCGGUUCGAAUUUAACUAGAUCC .......((((((...........(((((....)))))(((((...(((((...........((((((.....))))))...........)))))..))))))))))).......... ( -23.05, z-score = -2.60, R) >droSim1.chr2L 820271 111 + 22036055 UAAAAGCAAAUUCAGUACAUAUAAAAU-------UAUUGAAGCUUUGUUCCUAACUGAGCAUGUGUAUAAAUAAUGCACUACAUAAUGAUGGAACUCGGUUCGAAUUUAACUAGAUCC ..(((((...(((((((..........-------))))))))))))((((..(((((((...((((((.....))))))..(((....)))...))))))).))))............ ( -20.40, z-score = -1.43, R) >consensus ___AAGCAAAUUCAGUACGUAUAAAAUAAAACCUUAUUGAAGCCUUGUUCCUAACUGAGCAUGUGUAUAAAUAAUGCAUUACAUAAUGAUGGAACUCGGUUCGAAUUUAACUAGAUCC ....................................(((.((((..(((((...........((((((.....))))))...........)))))..))))))).............. ( -9.22 = -9.12 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:03 2011