| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,988,910 – 24,989,029 |
| Length | 119 |
| Max. P | 0.573946 |
| Location | 24,988,910 – 24,989,029 |
|---|---|
| Length | 119 |
| Sequences | 14 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 67.27 |
| Shannon entropy | 0.74136 |
| G+C content | 0.50016 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -12.41 |
| Energy contribution | -12.13 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.69 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573946 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24988910 119 + 27905053 UUUUUGCAUUUCUUUUUU-UUCCAGCUCGCAGUCCUGUUUUCUCGCUGACUAACCAAACCUUCCAGGGUCUCACCACCAUACGCGCUUUGCAGGCCCAAAGCGCCUUGGAGCAGGAGUUC (((((((...........-...((((..(((....)))......)))).............((((((((......)))....((((((((......)))))))).))))))))))))... ( -28.30, z-score = -0.48, R) >droSim1.chr3R 24660457 120 + 27517382 UCCCUGCGUUUCUUUUUUAUUUCAGCUCGUAGUCCUGUUUUCUCGUUGACUAACCAAACCUUCCAGGGUCUCACCACCAUUCGCGCUUUGCAGGCCCAAAGCGCAUUGGAGCAGGAGUUC ..(((((......................(((((.((......))..))))).........((((((((......)))....((((((((......)))))))).))))))))))..... ( -31.90, z-score = -1.84, R) >droSec1.super_4 3853420 118 + 6179234 UCCCUGCGUUUCUUUUUU--UUCAGCUCGUAGUCCUGUUUUCUCGUUGACUAACCAAACCUUCCAGGGUCUCACCACCAUUCGCGCUUUGCAGGCCCAAAGCGCCUUGGAGCAGGAGUUC ..(((((...........--........(((((((((........(((......)))......))))).)).))..(((...((((((((......))))))))..))).)))))..... ( -31.04, z-score = -1.30, R) >droYak2.chr3R 7322802 117 - 28832112 GUUCUGCAUUU--GUUUC-UUCCAGCUCGCAGUCCGGUUUUCUCGCUGACUAACCAAACCUUCCAGGGUCUUACCACCAUACGCGCUUUGCAGGCCCAAAGCGCUCUGGAACAGGAGUUC (..((((....--(((..-....)))..))))..)((((.((.....))..))))...(((((((((((......)))....((((((((......)))))))).)))))..)))..... ( -33.70, z-score = -1.55, R) >droEre2.scaffold_4820 7427410 117 - 10470090 GUUCUACAUUU--UUUUC-UUUCAGCUCGCAGUCCUGUUUUCUCGCUGACUAACCAAACCUUCCAGGGUCUCACCACCAUACGCGCUUUGCAGGCCCAAAGCGCCCUGGAGCAGGAGUUC ...........--.....-....(((((((((((..((......)).))))..........((((((((......)))....((((((((......)))))))).)))))))..))))). ( -29.40, z-score = -1.13, R) >droAna3.scaffold_13340 9444634 111 - 23697760 -------AUUCCUUUCUU--UAAAGCUCGCAGUCCGGUGUUCUCGCUGACAAACCAAACCUUCCAGGGUCUCACAACCAUUCGCGCUUUGCAGGCUCAAAGCGCCCUGGAGUCGGAGUUC -------...........--...(((((...(((.((((....)))))))..........(((((((((......)))....((((((((......)))))))).))))))...))))). ( -31.70, z-score = -1.27, R) >dp4.chr2 1831693 108 + 30794189 ------------UUGUUAAUUGCAGCUCGUAGUCCUGUCUUUUCGUUGGCAAAUCAAACUUUCCAAGGGCUUACCACCAUUCGCGCGUUGGAGGCACAGAGCGCCUUGGAGUCGGAGUUU ------------...........(((((.......((((........)))).........((((((((((((.((.(((.........))).))....)))).))))))))...))))). ( -27.80, z-score = 0.56, R) >droPer1.super_7 1995246 108 + 4445127 ------------UUGUUAUUUGCAGCUCGUAGUCCUGUCUUUUCGUUGGCAAAUCAAACUUUCCAAGGGCUUACCACCAUUCGCGCGUUGGAGGCACAGAGCGCCUUGGAGUCGGAGUUU ------------.....((((((....((.((......))...))...)))))).(((((((((((((((((.((.(((.........))).))....)))).)))))))....)))))) ( -27.90, z-score = 0.48, R) >droWil1.scaffold_181108 1679579 114 + 4707319 ------UCAUUAUGCAUAUUUCCAGCACGAAGUCCUGUCUUCUCGUUGACGAAUCAAACGUUUCAGGGUCUAACCACUAUACGGGCUUUGGAGGCUCAGAAUGCCUUGGAACUGGAGUUU ------.............((((((..((((((((.(((........)))(((........))).((......)).......))))))))(((((.......)))))....))))))... ( -30.90, z-score = -0.92, R) >droVir3.scaffold_12822 2255466 115 + 4096053 -----AAUCAAUGUUAUUUUUACAGCUCGCAGCCCUGUCUACUCGCUGACAAAUCAAACGUUCCAGGGCCUGACCACGGUACGUGCUCUGCAGGCACAGAGCGCCUUGGAGACGGAGUUU -----..................((((((((((...(....)..)))).)........(((((((((((...((....))....((((((......)))))))))))))).)))))))). ( -35.30, z-score = -0.90, R) >droMoj3.scaffold_6540 26390267 115 + 34148556 -----AAACUUUAUUUCUUUUGCAGCUCGCAGUCCCAUCUACUCGCUGACAAAUCAAACGUUUCAAGGUCUAACCACAGUACGUGCUCUGCAGGCACAGAGCGCGUUGGAGAGUGAGUUU -----..................(((((((..(((.........((((..((((.....))))...((.....)).))))((((((((((......)))))))))).)))..))))))). ( -31.40, z-score = -0.91, R) >droGri2.scaffold_14624 3190426 110 + 4233967 ----------AAUUUUCUUUUGCAGCUCGCAGUCCCAUCUACUCGCUGACGAAUCAAACGUUUCAGGGCCUGACAACGGUACGUGCUCUGCAGGCACAGAGCGCUCUAGAAACUGAGUUU ----------...(((((...((.((((((((.(((.((........)).(((........))).))).))).)........(((((.....))))).))))))...)))))........ ( -28.00, z-score = 0.35, R) >anoGam1.chr2R 2609946 107 - 62725911 -------------UCGAAUCUGUCAACCGAUCGCCGCUUUUCUCACACACCAAUGCGACUUUGCAAGGACUAUCAACGAUUCGGGCGUUUGGUGCACAGUCGAUACUCAAGCACGAGUUU -------------((((..((((..(((((.((((..............((..((((....)))).))........((...)))))).)))))..)))))))).((((......)))).. ( -25.50, z-score = -0.11, R) >triCas2.ChLG7 10147381 101 + 17478683 -------------------UUCUAGCCAGAAGUUCGAUUUACGGCCACAUGAGCGCCUCUAUGUCUGGUUUAAGCACAAUUCGGGCGUUUUCAGCCCAACGUAUCCUAAUAAAGGAGUUU -------------------....(((((((.((.......))((((......).)))......))))))).((((.......((((.......))))......((((.....)))))))) ( -24.10, z-score = -0.67, R) >consensus ________UUU_UUUUUU_UUGCAGCUCGCAGUCCUGUUUUCUCGCUGACAAACCAAACCUUCCAGGGUCUCACCACCAUACGCGCUUUGCAGGCACAAAGCGCCUUGGAGCAGGAGUUU .........................................(((..((......))....((((((((........).....((((((((......)))))))))))))))...)))... (-12.41 = -12.13 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:37 2011