| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,967,806 – 24,967,898 |
| Length | 92 |
| Max. P | 0.791696 |
| Location | 24,967,806 – 24,967,898 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 76.13 |
| Shannon entropy | 0.41462 |
| G+C content | 0.37569 |
| Mean single sequence MFE | -14.92 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24967806 92 - 27905053 UGAACAUAAACCAAUAACUAAAACGGAAGAUUAAGUCGUAGCCUAAUAAGGUAAAUGCAGUUCCCAAUUCAUAAACAGGAAGAAGGAUCUGG .............(..(((.((.(....).)).)))..).((((....)))).....(((.(((...(((........)))...))).))). ( -13.80, z-score = -0.42, R) >droYak2.chr3R 7301543 92 + 28832112 UCAGCAAAAAGAUAUCAUUAAAACGGAAUAUUAAGUCGUAGCCUAAUGAGGUAAAAGCAGUUCCGAUUCCAUAAACAGGAAGCAGGAUCUGG ..............((((((..((((.........))))....))))))........(((.(((..((((.......))))...))).))). ( -15.80, z-score = -0.89, R) >droEre2.scaffold_4820 7406039 89 + 10470090 UCAACAAAAACAUAACAUUAAAACGGAAUAUUAAAUCGUAGCC---UGAGGUAAAAUCAGUUCCGAGUGCUUAAACAGGAAGCAGGAUCUGG .......................((((........(((.(((.---(((.......)))))).))).(((((.......)))))...)))). ( -12.80, z-score = -0.24, R) >droSec1.super_4 3832370 77 - 6179234 --------------UGAACAAAA-AAAAGAUUAAGUCGUAGCCUAAUAAGGUAAAAGCAGUUCCGAUUCCUUAAACAGGAAGCAGGAUCUGG --------------.........-................((((....)))).....(((.(((..(((((.....)))))...))).))). ( -16.10, z-score = -2.01, R) >droSim1.chr3R 24644116 74 - 27517382 --------------UGAAC---A-AAAAGAUUAAGUCGUAGCCUAAUAAGGUAAAAGCAGUUCCGAUUCCUUAAACAGGAAGCAGGAUCUGG --------------.....---.-................((((....)))).....(((.(((..(((((.....)))))...))).))). ( -16.10, z-score = -1.85, R) >consensus U_A_CA_AAA___AUCAAUAAAACGGAAGAUUAAGUCGUAGCCUAAUAAGGUAAAAGCAGUUCCGAUUCCUUAAACAGGAAGCAGGAUCUGG ........................................((((....)))).....(((.(((..((((.......))))...))).))). (-11.64 = -12.32 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:32 2011