| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,930,217 – 24,930,320 |
| Length | 103 |
| Max. P | 0.949848 |
| Location | 24,930,217 – 24,930,320 |
|---|---|
| Length | 103 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 74.47 |
| Shannon entropy | 0.54453 |
| G+C content | 0.46665 |
| Mean single sequence MFE | -31.58 |
| Consensus MFE | -16.38 |
| Energy contribution | -15.70 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.55 |
| SVM RNA-class probability | 0.949848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24930217 103 - 27905053 UCCUUUUCAGCGGUUCGAAUCUCAUUGAUCUCGCCUUUGAGAUCAUCGAUCAUCAGCUGCUGCAUUUGUAGCAACUCAGAAGUUCGGUGUGGCAGCUGUAAAU---------- ...........(((.(((.......((((((((....))))))))))))))..(((((((..((((.(.(((.........))))))))..))))))).....---------- ( -29.91, z-score = -1.30, R) >droSim1.chr3R_random 1208322 103 - 1307089 UCCUUUUCAGCGGUUCGAAUUUCGUUGAUCUCGCCUUUGAGAUCAUCGAUCAUAAGCUGCUGCAUUUGUAGUAACUCAGAGGUUCGAUGUGGCAGCUGUAAAU---------- ...(((.((((.((((((((((((.((((((((....)))))))).).......((.((((((....)))))).))..)))))))))....)).)))).))).---------- ( -32.00, z-score = -2.18, R) >droSec1.super_4 3794886 103 - 6179234 UCCUUUUCAGCGGAUCGAAUUUCAUUGAUCUCGCCUUUGAGAUCAUCGAUCAUAAGCUGCUGCAUUUGUAGUAACUCAGAGGUUCGAUGUGGCAGCUGUAAAU---------- .........((.((((((.......((((((((....))))))))))))))...((((((..((((....(.((((....)))))))))..))))))))....---------- ( -32.21, z-score = -2.20, R) >droEre2.scaffold_4820 7368656 110 + 10470090 UCCUUUUCAGCGGUUCGAAUUUCAUUAAUCUCGCCCUUGAGAUCAUCGAUCAUAAGCUGCUGCAUUUGUAGUAUCUCAGAAGUUCGGUGUGGCAGCUGUAAAUCAGAUUA--- ...(((.((((.(((((((((((....((((((....))))))...........((.((((((....)))))).))..)))))))))....)).)))).)))........--- ( -25.90, z-score = -0.60, R) >droYak2.chr3R 7264095 103 + 28832112 UCCUUUUCAGCGGUUCGAAUUUCAUUAAUCUCUCCCUUUAGAUCAUCGAUCAUAAGCUGCUGCAUUUGUAGUAUCUCGGAAGUUCGGUGUGGCAGCUGUAAGU---------- ..(((..((((.(((((((((((.................((((...))))...((.((((((....)))))).))..)))))))))....)).)))).))).---------- ( -24.90, z-score = -1.29, R) >droAna3.scaffold_13340 4051970 110 + 23697760 UCCUUUUCGGCUGUUCGAAAAUCGUUGAUUUCGCCCUUGAGAUCAUCGAUCAUUAGCUGUUGCAUCUGCAGCAGCUCAGAGGUGCGAUGUGGCAGCUAAUAGAAGAAAGU--- ...(((((((....)))))))(((.((((((((....)))))))).)))(((((((((((..((((.(((.(........).)))))))..))))))))).)).......--- ( -41.20, z-score = -3.20, R) >dp4.chr2 21039147 113 + 30794189 UCCUUUUCGGCGGUGCGAAUGUCAUUGAUCUCCCCCUUGAGGUCAUCGAUCAUCAGCUGUUGCAUCUGCAAGGACUCCGAGGUGCGAUGCGGCAGCUAUAAAUCACCAAUAAA ...........((((.((..(((..(((((((......)))))))..)))..))((((((((((((.(((.((...))....)))))))))))))))......))))...... ( -40.10, z-score = -2.59, R) >droPer1.super_0 10724614 113 - 11822988 UCCUUCUCCGCGGUGCGAAUGUCAUUGAUCUCCCCCUUGAGGUCAUCGAUCAUCAGCUGUUGCAUCUGCAGGGACUCCGAGGUGCGAUGCGGCAGCUAGAAAGCAUCAAUAAA ...........(((((((..(((..(((((((......)))))))..)))..))(((((((((((((((.((....))...))).)))))))))))).....)))))...... ( -41.30, z-score = -2.00, R) >droWil1.scaffold_181108 4313779 93 + 4707319 ------------UCCUUAAUGUCGCUGAUUUCACCUUUCAGAUCGUCAAUCAUUAACUGUUGCAUCUGCAGCAAUUCCGAAGUGCGAUGAGGUAACUGUGAGAAC-------- ------------.((((...(((((..(((((........(((.....)))......((((((....)))))).....)))))))))))))).............-------- ( -19.50, z-score = 0.01, R) >droVir3.scaffold_12855 9273013 103 + 10161210 UCCUUCUCCGCGUUGCGUAUAUCACUGAUCUCACCCUUCAGAUCGUCUAUCAUCAGCUGCUGCACUUGCAACAGCUCCGAAGUGCGAUGCGGCAACUGCAACA---------- .........(((((((((((..(((((((((........))))).....((...(((((.(((....))).)))))..))))))..)))).))))).))....---------- ( -30.70, z-score = -2.34, R) >droMoj3.scaffold_6540 7638377 103 - 34148556 UCCUUCUCAGCAGUGCGUAUAUCACUGAUCUCGCCCUUCAAAUCGUCUAUCAUUAACUGUUGCACUUGCAGAAGUUCCGAGGUGCGAUGAGGUAACUGAAACA---------- ....(((((.(((((.......)))))...((((.((((.....(.....)...((((.((((....)))).))))..)))).)))))))))...........---------- ( -22.70, z-score = -0.03, R) >droGri2.scaffold_14906 12193554 103 + 14172833 UCCUUUUCAGCGCAGCGUAUAUCGCUGAUCUCGCCCUUGAGGUCGUCAAUCAUCAGCUGCUGCAUUUGUAGCAGCUCCGACGUACGAUGCGGCAACUGCAAAA---------- ..........((((.((((..(((..(((((((....)))))))..........(((((((((....))))))))).)))..)))).))))((....))....---------- ( -38.60, z-score = -3.05, R) >consensus UCCUUUUCAGCGGUUCGAAUAUCAUUGAUCUCGCCCUUGAGAUCAUCGAUCAUCAGCUGCUGCAUUUGCAGCAACUCCGAGGUGCGAUGUGGCAGCUGUAAAU__________ .........((.(..(((((.((..((((((........)))))).........((.((((((....)))))).))..)).)))))...).)).................... (-16.38 = -15.70 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:25 2011