| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,923,377 – 24,923,488 |
| Length | 111 |
| Max. P | 0.875674 |
| Location | 24,923,377 – 24,923,488 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 93.33 |
| Shannon entropy | 0.12781 |
| G+C content | 0.69863 |
| Mean single sequence MFE | -52.48 |
| Consensus MFE | -46.41 |
| Energy contribution | -47.63 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.875674 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24923377 111 - 27905053 GAACUGCUCCCGGCUCCUACUCCGGUACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUGAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((..(((....)))...)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). ( -53.80, z-score = -2.10, R) >droSim1.chr3R 24606714 111 - 27517382 GAACUGCUCCCGGCUCCUACUCCGGUACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUGAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((..(((....)))...)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). ( -53.80, z-score = -2.10, R) >droSec1.super_4 3788079 111 - 6179234 GAACUGCUCCCGGCUCCUACUCCGGUACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUGAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((..(((....)))...)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). ( -53.80, z-score = -2.10, R) >droEre2.scaffold_4820 7361832 111 + 10470090 GAACUGCUCCCGGCUCCUACACCGGCACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUGAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((((......)).....)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). ( -52.60, z-score = -1.80, R) >droYak2.chr3R 7257249 111 + 28832112 GAACUGCUCCCGGCUCCUACACCGGCACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUAAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((((......)).....)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). ( -52.60, z-score = -2.18, R) >droAna3.scaffold_13340 4045205 105 + 23697760 GAACUGUUACCGGCACCGACUCCGGUGCUCACACCCGAUCCG------CCCCCGGCGGUGGCUAUGAGGCCGCCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ...........(((((((....))))))).....(((..(((------(.(((((((((((((....)))))))...(((((......))))))))).))..)))).))). ( -48.30, z-score = -1.22, R) >consensus GAACUGCUCCCGGCUCCUACUCCGGUACUCAGACCGGCUCCAGUUCCUCCGGCGGCGGUGGCUAUGAGGCCACCACUGGUCACGCCGAUGACCGUCGUGGCAGCGGCCGGC ((((((...((((((((......)).....)).))))...))))))..(((((.(((((((((....)))))))....((((((.((.....)).)))))).)).))))). (-46.41 = -47.63 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:23 2011