| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,917,256 – 24,917,329 |
| Length | 73 |
| Max. P | 0.522345 |
| Location | 24,917,256 – 24,917,329 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 80.48 |
| Shannon entropy | 0.42927 |
| G+C content | 0.43971 |
| Mean single sequence MFE | -16.97 |
| Consensus MFE | -5.93 |
| Energy contribution | -6.51 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24917256 73 + 27905053 GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGGCC ((((.((((((......)))))))))).........................(((((((....)))).))).. ( -22.80, z-score = -3.57, R) >droSim1.chr3R 24600653 73 + 27517382 GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGGCC ((((.((((((......)))))))))).........................(((((((....)))).))).. ( -22.80, z-score = -3.57, R) >droSec1.super_4 3782055 73 + 6179234 GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGGCC ((((.((((((......)))))))))).........................(((((((....)))).))).. ( -22.80, z-score = -3.57, R) >droEre2.scaffold_4820 7355714 73 - 10470090 GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGGCC ((((.((((((......)))))))))).........................(((((((....)))).))).. ( -22.80, z-score = -3.57, R) >droYak2.chr3R 7251065 73 - 28832112 GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGUCC ((((.((((((......))))))))))..........................((((((....)))).))... ( -19.90, z-score = -2.92, R) >droAna3.scaffold_13340 4039633 73 - 23697760 AUGGCGAGCAUUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUUAUCCGUUCCACGAGGAGCCAGCU .((((((((((......))).)))................................(((....)))))))... ( -12.60, z-score = -0.45, R) >droMoj3.scaffold_6540 7623678 62 + 34148556 CCAACGACUAUUCAAACGUGCCUACACUUAUCGAUUUUUAUUUCAGUUUUAUCCGACUCGUU----------- ..(((((......(((((((....))).....((........)).))))........)))))----------- ( -4.94, z-score = -0.22, R) >droGri2.scaffold_14906 12178882 65 - 14172833 --------CAUUCAAAUGUGCCUACACUUAUCGAUUUUUAUUUCAUUUUUAUCCACAGCUUUCAGAUGCUGUC --------.........(((....)))...........................(((((........))))). ( -7.10, z-score = -0.99, R) >consensus GUGGUGGGCACUCAAACGUGCCUCUACUUAUCGAUUUUUAUUUCAUUUUCAUCCGCUCCACUAGGAGACGGCC .((((((((((......))))...........((........)).............)))))).......... ( -5.93 = -6.51 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:19 2011