| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,911,448 – 24,911,561 |
| Length | 113 |
| Max. P | 0.736263 |
| Location | 24,911,448 – 24,911,561 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.19354 |
| G+C content | 0.30173 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -18.00 |
| Energy contribution | -17.76 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.736263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24911448 113 - 27905053 AGAUAGGAAAAUA-UUGAUUAGCACGGUGAAUAGGCUAUAAUAAACUUGUACUUUAAUUAACGGAUUUCCAAACCUACGUUGG-----UUUAAUUAUGCUUUUCGUGUUAAUCAAAUCA .............-(((((((((((((.....((((.(((((....................((....))(((((......))-----))).))))))))).))))))))))))).... ( -27.50, z-score = -3.03, R) >droSim1.chr3R 24597259 113 - 27517382 AGAUAGGAAAGUA-UUGAUUAGCACGGUGAAUAGGCUAUAAUAAACUUGUACUUUAAUUAACGGAUUUCCAAAUCUAUGGCGG-----UUUAAUUAUGCUUUUCGUGCUAAUCAAAUCA .............-(((((((((((((.....((((.((((((((((.((............((....)).........))))-----))).))))))))).))))))))))))).... ( -26.90, z-score = -2.40, R) >droYak2.chr3R 7245078 112 + 28832112 --AUAGGAAAAUUAUUGAUUAGCACGGUGAAUAGGCCAUAAUAAACUUGUAGCUUAAUUAACGUAUUUCUAAACCUACGACGA-----UUUAAUUAUGCUUUCCGUGUUAAUCAAAUCA --............(((((((((((((.....((((.(((((((((((((((......................)))))).).-----))).))))))))).))))))))))))).... ( -25.55, z-score = -2.87, R) >droEre2.scaffold_4820 7349785 116 + 10470090 --GUAGGAAAAUU-UUGAUUAGCACAGUGAAUAGGCCAUAAUAAACUUGUAGUUCAAUUAACGUAUUUCUAAAUCUAUGAUGGACAUUAUUAAUUAUGCUUUUCGUGUUAAUCAAAUCA --..........(-(((((((((((...(((.((((.(((((.((..(((...(((.....................)))...)))...)).))))))))))))))))))))))))... ( -19.70, z-score = -0.64, R) >droSec1.super_4 3774724 113 - 6179234 AGAUAGGAAAGUA-UUGAUUAGCACGGUGAAUAGGCUAUAAUAAACUUGUACUUUAAUUAACAGAUUUCCAAACCUAUGGCGG-----UUUAAUUAUGCUUUUCGUGUUAAUCAAAUCA .............-(((((((((((((.....((((.(((((....((((..........))))......(((((......))-----))).))))))))).))))))))))))).... ( -24.40, z-score = -1.67, R) >consensus AGAUAGGAAAAUA_UUGAUUAGCACGGUGAAUAGGCUAUAAUAAACUUGUACUUUAAUUAACGGAUUUCCAAACCUAUGACGG_____UUUAAUUAUGCUUUUCGUGUUAAUCAAAUCA ..............(((((((((((((.....((((.(((((.....(((..........)))..........((......)).........))))))))).))))))))))))).... (-18.00 = -17.76 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:14 2011