| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,023,833 – 9,023,931 |
| Length | 98 |
| Max. P | 0.995337 |
| Location | 9,023,833 – 9,023,931 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 84.19 |
| Shannon entropy | 0.26003 |
| G+C content | 0.44378 |
| Mean single sequence MFE | -27.92 |
| Consensus MFE | -21.44 |
| Energy contribution | -22.36 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.14 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.79 |
| SVM RNA-class probability | 0.995337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9023833 98 - 23011544 CACUUACACUUACACUUACACUAACAGGGGGAAUUAUAAUUAAUUUAUGCCGGGUGCUGCGCAAGUGUUUGCUCGGACGC-CUCUAAGUGAACUACUGA ..................((((...(((((((((((....))))))...((((((((.((....))))..))))))...)-)))).))))......... ( -22.90, z-score = -1.06, R) >droSec1.super_3 4490096 92 - 7220098 ------CACUUACACUUACACUUACAGGGGGAAUUAUAAUUAAUUUAUGCCGGGUGCUGCGAAAGUGUUUGCUCGGACGC-CUCUAAGUGAACUACUGA ------............((((((.(((.(((((((....))))))...((((((((.((....))))..)))))).).)-)).))))))......... ( -25.90, z-score = -2.62, R) >droYak2.chr2L 11683155 86 - 22324452 ------------CACUUACACUUAGAGGGGGAAUUAUAAUUAAUUUAUGCCGGGUGUUCAGCAAGUGUUCGCUCGGACGC-CUCUAAGUGAACUACUGA ------------......((((((((((.(((((((....))))))...(((((((..((.....))..))))))).).)-)))))))))......... ( -32.30, z-score = -4.58, R) >droEre2.scaffold_4929 9621872 86 - 26641161 ------------CACUUACACUUAGAGGGGGAAUUAUAAUUAAUUUAUGCCGGGUGCUGCGCAAGUGUUUGCUCGGACGC-CUCUAAGUGAACUACUGA ------------......((((((((((.(((((((....))))))...((((((((.((....))))..)))))).).)-)))))))))......... ( -32.10, z-score = -4.39, R) >droAna3.scaffold_12943 362407 80 - 5039921 ------------------CACUUACAAGGGGAAUUAUAAUUAAUUUAUGCCGAGUGUUG-GCAAGUGGUUGCUCGGACGCUCUGUAAGUGAGCUACUGG ------------------((((((((.((.((((((....))))))...))((((((((-((((....)))))..)))))))))))))))......... ( -26.40, z-score = -3.05, R) >consensus ____________CACUUACACUUACAGGGGGAAUUAUAAUUAAUUUAUGCCGGGUGCUGCGCAAGUGUUUGCUCGGACGC_CUCUAAGUGAACUACUGA ..................((((((((((.(((((((....))))))...(((((((..((....))...))))))).).).)))))))))......... (-21.44 = -22.36 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:26 2011