| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,908,836 – 24,908,927 |
| Length | 91 |
| Max. P | 0.963202 |
| Location | 24,908,836 – 24,908,927 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 94.22 |
| Shannon entropy | 0.07899 |
| G+C content | 0.52719 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -15.70 |
| Energy contribution | -15.70 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.75 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963202 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24908836 91 - 27905053 UCCGUUUCACACUCUCUGGCUCACCUGAGCUCACCUUUGCC-UUUGCAUUUAUAUACCUUCCUGCGGUGUGAUUAU-CUUCCUCCCGCUCCAC ......(((((((....(((((....)))))......(((.-...))).................)))))))....-................ ( -15.70, z-score = -2.12, R) >droYak2.chr3R 7242414 92 + 28832112 UCCGUUUCACACUCUCUGGCUCACCUGAGCUCACCUUUGCCUUUUGCAUUUAUGUACCCACCUGCGGUGUGAUUAU-CCUCCUCCCGCUCCAC ......(((((((....(((((....)))))......(((.....))).................)))))))....-................ ( -15.70, z-score = -1.45, R) >droEre2.scaffold_4820 7347147 92 + 10470090 UCCGUUUCACACUCUCUGGCUCACCUGAGCUCACCUUUGCC-UUUGCAUUUAUGUACCUUCCUGCGGUGUGAUUAUCCUCCCCCCCGCUCCAC ......(((((((....(((((....)))))......(((.-...))).................)))))))..................... ( -15.70, z-score = -1.67, R) >consensus UCCGUUUCACACUCUCUGGCUCACCUGAGCUCACCUUUGCC_UUUGCAUUUAUGUACCUUCCUGCGGUGUGAUUAU_CUUCCUCCCGCUCCAC ......(((((((....(((((....)))))......(((.....))).................)))))))..................... (-15.70 = -15.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:13 2011