| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,897,791 – 24,897,886 |
| Length | 95 |
| Max. P | 0.750587 |
| Location | 24,897,791 – 24,897,886 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 88.44 |
| Shannon entropy | 0.20075 |
| G+C content | 0.36353 |
| Mean single sequence MFE | -20.64 |
| Consensus MFE | -17.10 |
| Energy contribution | -17.62 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.750587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24897791 95 + 27905053 GGUAGAGUCCUCAUGCUGUUAUAAAUGAUGUUGAUAUGCAUGAAUGGUUGGUUUUCCGACAUUCAGUCCCAGUUC----UUUUACUUUUUUUUUUACCA (((((((...(((((((((((..........))))).))))))...(((((....)))))...............----............))))))). ( -21.60, z-score = -1.93, R) >droEre2.scaffold_4820 7337464 99 - 10470090 GCUAAAGUCCUCAUGCUGUUAUAAAUGAUGUUGAUAUGCAUGAAUGGUUGGGCUUCCGACUUUCAGUUUCAGUUCGAGUUCUUUUACUUUUUUGUAUCG (..((((..(((..((((..((.....((((......))))(((.((((((....))))))))).))..))))..)))..))))..)............ ( -20.90, z-score = -1.07, R) >droYak2.chr3R 7232581 93 - 28832112 GCUAGAGUCCUCAUGCUGUUAUAAACGAUGUUGAUAUGCAUGAAUGGUUGGUUUUCCGACAUUCAGUUUCAGUUA----UUUU--CCUUUUUUUUAUCG (((.((((..(((((((((((..........))))).))))))...(((((....))))))))))))........----....--.............. ( -17.10, z-score = -0.87, R) >droSec1.super_4 3762411 93 + 6179234 GGUAGAGUCCUCAUGCUGUUAUAAAUGAUGUUGAUAUGCAUGAAUGGUUGGUUUUCCGACUUUCAGUCCCAGUUC----UUUA--CUUUUUUUUUAUCG (((((((..((((((((((((..........))))).))))))..((((((....))))))..........)..)----))))--))............ ( -21.80, z-score = -2.39, R) >droSim1.chr3R 24584758 93 + 27517382 GGUAGAGUCCUCAUGCUGUUAUAAAUGAUGUUGAUAUGCAUGAAUGGUUGGUUUUCCGACUUUCAGUGCCAGUUC----UUUA--CUUUUUUUUUAUCG (((((((..((((((((((((..........))))).))))))..((((((....))))))..........)..)----))))--))............ ( -21.80, z-score = -2.09, R) >consensus GGUAGAGUCCUCAUGCUGUUAUAAAUGAUGUUGAUAUGCAUGAAUGGUUGGUUUUCCGACUUUCAGUCCCAGUUC____UUUU__CUUUUUUUUUAUCG (((((((...(((((((((((..........))))).))))))...(((((....)))))...............................))))))). (-17.10 = -17.62 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:09 2011