| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,892,149 – 24,892,241 |
| Length | 92 |
| Max. P | 0.554699 |
| Location | 24,892,149 – 24,892,241 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 70.11 |
| Shannon entropy | 0.57376 |
| G+C content | 0.40093 |
| Mean single sequence MFE | -21.32 |
| Consensus MFE | -12.53 |
| Energy contribution | -12.30 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.59 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.554699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24892149 92 + 27905053 ---CCCGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA------CGAUUGUGGUUAUACAAA--GACGUUUUGGCAGUGUUUACAUUGGAAACGUUUU- ---...((((((((.(((((.(..((((((((.....(((...------(..(((((....))))).--).)))...))))))))..).))))).))))))))- ( -23.30, z-score = -1.70, R) >droAna3.scaffold_13340 4021385 100 - 23697760 ---CCGAGAAUGUUAUCGAUAUUUACAUUGUUUACAAGCCAGGGCCGGGCAGAUAAAGUCGUGUGAGCGGAGGUGUUGGCACUGUUUACACUGGAAAUAUUUC- ---.(((........)))((((((.((.(((..(((.(((((.(((.(((.......)))((....))...))).)))))..)))..))).)).))))))...- ( -24.70, z-score = -0.53, R) >droEre2.scaffold_4820 7331796 92 - 10470090 ---CCCGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA------CGAUGGUGGUUAUACAAA--GACGUGUUGGCAGUGUGUACACUGGAAAUGUUUU- ---...((((((((.(((.....((((((((.......(((((------((.(..((......))..--).))))))))))))))).....))).))))))))- ( -22.71, z-score = -0.42, R) >droYak2.chr3R 7226877 92 - 28832112 ---CCGGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA------CGAUGGGGGUUAUACAAA--GACGUGUUGGCACUCUUUACACUGGAAAUGUUUU- ---((((...(.((((((.((((..((.((....)))).))))------)))))).).......(((--((.(((....))))))))...)))).........- ( -17.90, z-score = -0.02, R) >droSec1.super_4 3756779 92 + 6179234 ---CCCGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA------CGAUUGUGGUUAUACAAA--GACGUGUUGGCAGUGUUUACACUGGAAACAUUUU- ---.((((..((....))......(((((((.......(((((------((.(((((....))))).--..)))))))))))))).....)))).........- ( -20.81, z-score = -0.65, R) >droSim1.chr3R 24579192 92 + 27517382 ---CUCGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA------CGAUUGUGGUUAUACAAA--GACGUGUUGGCAGUGUUUACACUGGAAACGUUUU- ---...((((((((.(((......(((((((.......(((((------((.(((((....))))).--..))))))))))))))......))).))))))))- ( -23.91, z-score = -1.53, R) >droVir3.scaffold_12855 9223068 98 - 10161210 CUUGAAUGAAGGUCUUUGAUAACCGU-UUGAUAGAAACUUGCAACCUUUCAGCCUUGUUUUUACCCA-----GGUUGGUUAGUGUACAUUUUAAGUGCCAUUUU ..........(((.(((((.....((-((.....)))).((((.....(((((((.((....))..)-----))))))....))))....))))).)))..... ( -15.90, z-score = 0.70, R) >consensus ___CCCGGAACGUUAUCGAUAUUUACACUGUUUACAUGCGAUA______CGAUUGUGGUUAUACAAA__GACGUGUUGGCAGUGUUUACACUGGAAACGUUUU_ .......(((((((.(((......(((((((..(((((.................................)))))..)))))))......))).))))))).. (-12.53 = -12.30 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:06 2011