Sequence ID | dm3.chr3R |
---|---|
Location | 24,889,428 – 24,889,499 |
Length | 71 |
Max. P | 0.982622 |
Location | 24,889,428 – 24,889,499 |
---|---|
Length | 71 |
Sequences | 6 |
Columns | 76 |
Reading direction | reverse |
Mean pairwise identity | 75.87 |
Shannon entropy | 0.43886 |
G+C content | 0.45126 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -8.96 |
Energy contribution | -9.27 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.29 |
Mean z-score | -3.09 |
Structure conservation index | 0.41 |
Background model | dinucleotide |
Decision model | sequence based alignment quality |
SVM decision value | 2.11 |
SVM RNA-class probability | 0.982622 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24889428 71 - 27905053 ---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUCU ---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score = -3.45, R) >droSim1.chr3R 24576511 71 - 27517382 ---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUUU ---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score = -3.68, R) >droSec1.super_4 3754124 71 - 6179234 ---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUUU ---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score = -3.68, R) >droYak2.chr3R 7224104 71 + 28832112 ---GAUACUAUCGAUGUAUCCAGAAAACUGGCAGCAUCGAUGU--UUGCCUUGCAGCCAUCGAUUGUUUUCACUCC ---((.((.((((((((..((((....))))..)))))((((.--((((...)))).))))))).))..))..... ( -20.90, z-score = -3.08, R) >droEre2.scaffold_4820 7329113 71 + 10470090 ---GAUACUAUCGAUGUAUCUAGAAAACUGACAGAAUCGAUGU--UUGCCUCGCAGCCAUCGAUUGUUUUCACUCC ---(((((.......)))))..((((((......((((((((.--((((...)))).))))))))))))))..... ( -20.30, z-score = -3.48, R) >droVir3.scaffold_12855 9218466 76 + 10161210 GGCGACGUGUGAGUCGCAUACGAGUAGGCGGGAUGGCUGAUGUUCUUGCUUUGCUGCGAACUACUGUCGUCUCACU (((((((.(((..(((((.....((((((((((..((....)))))))).)))))))))..))))))))))..... ( -26.80, z-score = -1.15, R) >consensus ___GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU__UUGCCCCGCAACCAUCGAUUGUAUUCACUCU ...((....((((((((...(((....)))...)))))((((...((((...)))).))))))).....))..... ( -8.96 = -9.27 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:04 2011