Locus 11970

Sequence ID dm3.chr3R
Location 24,889,428 – 24,889,499
Length 71
Max. P 0.982622
window16443

overview

Window 3

Location 24,889,428 – 24,889,499
Length 71
Sequences 6
Columns 76
Reading direction reverse
Mean pairwise identity 75.87
Shannon entropy 0.43886
G+C content 0.45126
Mean single sequence MFE -21.68
Consensus MFE -8.96
Energy contribution -9.27
Covariance contribution 0.31
Combinations/Pair 1.29
Mean z-score -3.09
Structure conservation index 0.41
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.11
SVM RNA-class probability 0.982622
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 24889428 71 - 27905053
---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUCU
---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score =  -3.45, R)
>droSim1.chr3R 24576511 71 - 27517382
---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUUU
---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score =  -3.68, R)
>droSec1.super_4 3754124 71 - 6179234
---GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU--UUGCCCCGCAACCAUCGAUUGUAUUCACUUU
---(((((.((((((((...(((....)))...)))))((((.--((((...)))).))))))).)))))...... ( -20.70, z-score =  -3.68, R)
>droYak2.chr3R 7224104 71 + 28832112
---GAUACUAUCGAUGUAUCCAGAAAACUGGCAGCAUCGAUGU--UUGCCUUGCAGCCAUCGAUUGUUUUCACUCC
---((.((.((((((((..((((....))))..)))))((((.--((((...)))).))))))).))..))..... ( -20.90, z-score =  -3.08, R)
>droEre2.scaffold_4820 7329113 71 + 10470090
---GAUACUAUCGAUGUAUCUAGAAAACUGACAGAAUCGAUGU--UUGCCUCGCAGCCAUCGAUUGUUUUCACUCC
---(((((.......)))))..((((((......((((((((.--((((...)))).))))))))))))))..... ( -20.30, z-score =  -3.48, R)
>droVir3.scaffold_12855 9218466 76 + 10161210
GGCGACGUGUGAGUCGCAUACGAGUAGGCGGGAUGGCUGAUGUUCUUGCUUUGCUGCGAACUACUGUCGUCUCACU
(((((((.(((..(((((.....((((((((((..((....)))))))).)))))))))..))))))))))..... ( -26.80, z-score =  -1.15, R)
>consensus
___GAUACUAUCGAUGUAUACAGAUAACUGGCAGCAUCGAUGU__UUGCCCCGCAACCAUCGAUUGUAUUCACUCU
...((....((((((((...(((....)))...)))))((((...((((...)))).))))))).....))..... ( -8.96 =  -9.27 +   0.31) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:04 2011