| Sequence ID | dm3.chr2L |
|---|---|
| Location | 9,020,054 – 9,020,147 |
| Length | 93 |
| Max. P | 0.661650 |
| Location | 9,020,054 – 9,020,147 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.05 |
| Shannon entropy | 0.42150 |
| G+C content | 0.43980 |
| Mean single sequence MFE | -23.52 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.27 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 9020054 93 + 23011544 ----CCCCGCAGGGCCCCAAACAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC-- ----....(((((((....((((((((((((((.....--------------...)))).)))))))))).......))).))))((((((...))))))...........-- ( -26.30, z-score = -2.04, R) >droSim1.chr2L 8796038 93 + 22036055 ----CCCCGCAGGGCCCCAAACAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC-- ----....(((((((....((((((((((((((.....--------------...)))).)))))))))).......))).))))((((((...))))))...........-- ( -26.30, z-score = -2.04, R) >droSec1.super_3 4486313 94 + 7220098 ---CCCCGGCAGGGUCCCAAACAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC-- ---....(((...((....((((((((((((((.....--------------...)))).))))))))))....)).)))(((((......)))))...............-- ( -25.60, z-score = -1.54, R) >droEre2.scaffold_4929 9618017 93 + 26641161 ----CCCCGCAGGGUCCCAAACAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC-- ----....(((((((..(.((((((((((((((.....--------------...)))).))))))))))....)..))).))))((((((...))))))...........-- ( -24.80, z-score = -1.74, R) >droYak2.chr2L 11678497 93 + 22324452 ----CCCCGCUGGGCCCCAAACAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC-- ----....((((.((....((((((((((((((.....--------------...)))).))))))))))....((((...))))....)).))))...............-- ( -24.70, z-score = -1.41, R) >droAna3.scaffold_12943 358822 96 + 5039921 --AUCCCCCUAGGGCUCCCUGCAUUUUAUUUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUCC- --..(((....)))....((((.(((((...(((((((--------------((....))).)))))).)))))))))..(((((......)))))................- ( -24.90, z-score = -1.69, R) >dp4.chr4_group5 1300270 93 + 2436548 ----CCCAGUCGUCUCCUAUGCAUUUUAUAUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGUUGCACGUGCGCAGCAUGUUUAAUUAUCCC-- ----.............(((((.(((((...(((((((--------------((....))).)))))).)))))((.((((.....)).)))).)))))............-- ( -17.90, z-score = -0.51, R) >droPer1.super_5 5707087 93 + 6813705 ----CCCAGUCGUCUCCUAUGCAUUUUAUAUCAUUUUU--------------GCUUGAGCAUAAAAUGUUGAAAGCAGCCGUUGCACGUGCGCAGCAUGUUUAAUUAUCCC-- ----.............(((((.(((((...(((((((--------------((....))).)))))).)))))((.((((.....)).)))).)))))............-- ( -17.90, z-score = -0.51, R) >droWil1.scaffold_180703 3798526 97 + 3946847 -CCCUUCUGUGCCCCCCAUUGCAUUUUAUAUGCUUUU---------------ACUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUGUCCG -.....((((((........((((((..(((((((..---------------....))))))))))))).....((((...))))....))))))((((......)))).... ( -22.90, z-score = -1.67, R) >droVir3.scaffold_12963 319862 90 + 20206255 --------------CCCCAUGCAUUUUAUUUGUUUUU-------ACUCAAAUAUCAGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUG-- --------------...((.((((((((..((((((.-------...........)))))))))))))))).(((((...(((((......))))).))))).........-- ( -18.10, z-score = -0.54, R) >droMoj3.scaffold_6500 11793307 111 + 32352404 GCUCCGUCCCUGCGGCCAAUGCAUUUCAUUUAGUUUUUUCCCUUGCUUGAAUAUCAGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUG-- (((.((..(.((((((...(((.(((((....(((((......(((((........))))).)))))..))))))))...)))))).)..)).)))...............-- ( -31.10, z-score = -2.14, R) >droGri2.scaffold_15126 5091702 90 - 8399593 --------------CCCCAUGCAUUUUAUUCGUCUUU-------GCUUCAACAUCGGGACGUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUG-- --------------...((.((((((((..(((((((-------(......))..)))))))))))))))).(((((...(((((......))))).))))).........-- ( -21.70, z-score = -0.66, R) >consensus ____CCCCGCAGGGCCCCAUGCAUUUUAUUUCAUUUUU______________GCUUGAGCAUAAAAUGUUGAAAGCAGCCGCUGCACGUGCGCAGCAUGUUUAAUUAUCUC__ ........................................................((((((.....((((....)))).(((((......)))))))))))........... (-14.63 = -14.27 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:27:25 2011