| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,871,952 – 24,872,003 |
| Length | 51 |
| Max. P | 0.772977 |
| Location | 24,871,952 – 24,872,003 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 83.76 |
| Shannon entropy | 0.26859 |
| G+C content | 0.52461 |
| Mean single sequence MFE | -14.88 |
| Consensus MFE | -12.71 |
| Energy contribution | -13.46 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24871952 51 + 27905053 ACGAUCGCAGUUCAUGUUAACCUAC--CAGUUCGAUGGAUUGCGAUGCGGUCG .((((((((((((((...(((....--..)))..)))))))))))).)).... ( -17.20, z-score = -2.20, R) >droAna3.scaffold_13340 4001634 50 - 23697760 ACGAUCGCAGUUCAUGUUCACCCCCGUCACUUUGAUUGUUCGCGAUCCGG--- ..((((((.(..((...(((............))).))..)))))))...--- ( -9.30, z-score = -0.24, R) >droSec1.super_4 3735046 51 + 6179234 ACGAUCGCAGUUCAUGUUCACCUAC--CAGUUCGAUGGAUUGCGAUGCGGUCG .(((((((((((((((..(......--..)..).)))))))))))).)).... ( -16.90, z-score = -1.77, R) >droSim1.chr3R 24558432 52 + 27517382 ACGAUCGCAGUUCAUGUUCACCAGUU-CAGUUCGAUGGAUUGCGAUGCGGUCG .(((((((((((((((..(.......-..)..).)))))))))))).)).... ( -16.10, z-score = -1.32, R) >consensus ACGAUCGCAGUUCAUGUUCACCUAC__CAGUUCGAUGGAUUGCGAUGCGGUCG .((((((((((((((...................)))))))))))).)).... (-12.71 = -13.46 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:03 2011