| Sequence ID | dm3.chr3R |
|---|---|
| Location | 24,825,019 – 24,825,101 |
| Length | 82 |
| Max. P | 0.532536 |
| Location | 24,825,019 – 24,825,101 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 58.87 |
| Shannon entropy | 0.74750 |
| G+C content | 0.37496 |
| Mean single sequence MFE | -11.67 |
| Consensus MFE | -6.85 |
| Energy contribution | -6.35 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.43 |
| Mean z-score | 0.16 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532536 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 24825019 82 + 27905053 ----UACUUGUUUGCAAGCAUUA-AAAUUCAAAAAAGCUCAUUAAUGA-AUGACUUUACACCUUCGGCGCGCACUGUCUGCGUGUAAA ----..((((....)))).....-.........((((.(((((....)-)))))))).........(((((((.....)))))))... ( -16.40, z-score = -0.78, R) >droPer1.super_0 7242342 84 + 11822988 ----CAUUAUUUUAAGCUUUUCACAAACUCAAUUAAAUACUCAUUACACAGCGCUUUAUAUUUGCGGGUCGCACUGUUUGCCAUUUAC ----...................(((((.......................(((.........)))((.....)))))))........ ( -5.50, z-score = 1.45, R) >dp4.chr2 17582917 84 - 30794189 ----CAUUAUUUUAAGCUUUUCACAAACUCAAUUAAAUACUCAUUACGCAGCGCUUUAUAUUUGCGGGUCGCACUGUUUGCCAUUUAC ----...................(((((..................(((((..........)))))((.....)))))))........ ( -6.60, z-score = 1.58, R) >droEre2.scaffold_4820 7258119 64 - 10470090 ----CACUUGUUUGAGAACAUAA-AAGUUCAAUGAAAC-------------------ACAGCUAUGACGCGCACUGUCUGCGUGAAAA ----....(((((.(((((....-..))))..).))))-------------------).........((((((.....)))))).... ( -13.00, z-score = -0.50, R) >droYak2.chr3R 7157903 81 - 28832112 AACACGUUUGUUUAAUUUCAAUU-AAAUACAAUUAUGUUUGCA------ACCGCUUUACAACAUCGACGCGCACUGUCUGCGUGUAAA ....((..((((((((....)))-)))))......(((..((.------...))...)))....))(((((((.....)))))))... ( -14.30, z-score = -0.22, R) >droSec1.super_4 3687184 79 + 6179234 ----CACUUGUUUGCAAGCAUUA-AAAUUCAAAAAAACUCCUGUA----AUGACUUUACACCUUCGGCGCGCACUGUCUGCGUGUAAA ----..((((....)))).....-.................((((----(.....)))))......(((((((.....)))))))... ( -14.20, z-score = -0.55, R) >consensus ____CACUUGUUUAAGAUCAUUA_AAAUUCAAUUAAACUCUCAU_____AGCGCUUUACACCUUCGGCGCGCACUGUCUGCGUGUAAA ..................................................................(((((((.....)))))))... ( -6.85 = -6.35 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:53:00 2011